PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00098.1.g00890.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 337aa    MW: 36459.5 Da    PI: 4.4697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00098.1.g00890.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-2085136156
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                     +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++ge
  Zjn_sc00098.1.g00890.1.sm.mkhc  85 CGFRGVRQRT-WGKWVAEIREP---N-RaNRLWLGTFPTAEDAARAYDEAARAMYGE 136
                                     79*****999.**********8...3.469************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1385136IPR001471AP2/ERF domain
CDDcd000182.78E-3185143No hitNo description
SuperFamilySSF541711.18E-2186144IPR016177DNA-binding domain
SMARTSM003801.6E-3586149IPR001471AP2/ERF domain
PROSITE profilePS5103222.47186143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3187144IPR001471AP2/ERF domain
PRINTSPR003673.9E-108798IPR001471AP2/ERF domain
PRINTSPR003673.9E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTVDQKAATP SRMQQVQPLQ PGRKKRPRRS RDGPNSVTAV IQRWAQINQE LEHDPGAAKK  60
PRKAPAKGSK KGCMKGKGGP ENTVCGFRGV RQRTWGKWVA EIREPNRANR LWLGTFPTAE  120
DAARAYDEAA RAMYGELART NFPSHVSTST QVAPAPLEVV QPVSVSSEST MTSNHSDIVS  180
SDKPDASDIS STMNSGAESL GTMPCEPKIE SAALDQSADG HLVPEAGSSS AADEVFEPLE  240
PIANLPLGNE VFDIDEMLSM MEADPQNEGS WNTANGGDAT AGLEQPFFVD GLDATLLENM  300
LQSEPEPWLV SQDPEMYLAG FENPDFFEGS GFPEKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1687146363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A9e-16871521581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302434.11e-124dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R48e-86DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A1N7TB581e-170A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRINGSi022619m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.29e-27DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]