PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00098.1.g00500.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 317aa    MW: 34628.8 Da    PI: 7.1545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00098.1.g00500.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-056688123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C+ Cg+ F++   L  H+++H
  Zjn_sc00098.1.g00500.1.am.mk 66 YSCSFCGREFRSAQALGGHMNVH 88
                                  99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-66392No hitNo description
Gene3DG3DSA:3.30.160.602.7E-46490IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.3E-66689IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.2176693IPR007087Zinc finger, C2H2
SMARTSM003550.0026688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDPTRYWMLT RRKLGEAKVP PFASSSITVG SGGSSSAAYY ESWEERAFAE DSAGHLGGCI  60
WPPRSYSCSF CGREFRSAQA LGGHMNVHRR DRARLKLAGV ADDGGSDTQI VSPHQRYMIQ  120
PCPPQVASLQ HAYVANPNDP SHDTSPDALC SVLDAPRSLA QPAAARKAWG NQVLSAPLAL  180
LPAWIDTGKK EVLRATAQLS QNHARPAERS VSVCSNQELQ VGSGGYKLSI LGCQKRRSDF  240
KEGSEDEDSV YVGCKRRRID LETSPLILCS FSQKHQQDEE DNGEEQPSDP KVLKLCPSSP  300
VEEPDLELRI GVAPKIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-126188229superman protein
2l1o_A3e-126188229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254258KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963902.21e-123uncharacterized protein LOC101766620
TrEMBLA0A3L6R8N71e-127A0A3L6R8N7_PANMI; Uncharacterized protein
STRINGSi024070m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-25C2H2 family protein