PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00097.1.g01260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 552aa    MW: 59502.1 Da    PI: 4.5591
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00097.1.g01260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS199.81.7e-611174873373
                          GRAS   3 elLlecAeavssgdlelaqalLarlsel....aspdgd...........pmqRlaayfteALaarlarsvselykalppse 68 
                                   +lL++cA av+++d + a+a+L+r+  l    +    +           +   la yf+++L++r+++   +  +    ++
  Zjn_sc00097.1.g01260.1.am.mk 117 NLLVACAMAVEARDSTTASAILSRVDSLlthgV----ShrsyhhaavdsASDILAGYFARGLHSRMSS---GARR----TA 186
                                   79**********************998855432....222345566666888999************9...2222....22 PP

                          GRAS  69 tseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147
                                   +++   ++++ a+++++e+sP++kf+h+taNqaIlea++ +    +H++D+++++G+QW++L+  La R++g+ ++R+T+v
  Zjn_sc00097.1.g01260.1.am.mk 187 AAPALPENRMPAYRALQELSPFIKFAHFTANQAILEAAAADdgPDLHVVDLNVGEGVQWASLMADLA-RTGGKSTFRLTAV 266
                                   22233567899**************************999977899********************9.68*********** PP

                          GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228
                                         ++ +    ++ L++fAe+l++pf+++ l+ ++ edl+  + +  ++  +++++     +      s+ + ++ +L
  Zjn_sc00097.1.g01260.1.am.mk 267 ITDP--DAGRGCMAARWLSEFAESLNLPFRYSSLHLRDEEDLHSFAAESCNDSPVIISCDTTDCSYS----SVIKLQTLLL 341
                                   9932..66666777888*****************999888888877788889999999988555554....44445579** PP

                          GRAS 229 klvkslsPkvvvvveqe....adhnse.......sFlerflealeyysalfdsleaklpres..eerikvErellgreivn 296
                                   + vk l+Pk+vv+ve e      +n++       sF+e f +al++++a++dsl++++           vEre+lg +i++
  Zjn_sc00097.1.g01260.1.am.mk 342 RSVKILQPKLVVLVEDEllriGRTNQStpglalgSFAEFFRDALHHFAAVLDSLASGFCDGGygACLDLVEREMLGLRIED 422
                                   *****************65532334449999999********************999988877788899************ PP

                          GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   +va  +a+            +  ++ G++p  ls+++++qak+l+  ++ +g+ v +e g l l+W+++pL+svS+W
  Zjn_sc00097.1.g01260.1.am.mk 423 AVARYQAA-----------AMTGDMQGLRPCDLSSFNVAQAKMLVGLFS-RGFGVVHEAGRLALCWNSKPLTSVSVW 487
                                   ****9999...........3455789***********************.*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.74389469IPR005202Transcription factor GRAS
PfamPF035145.9E-59117487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
METMSYPSSP FIPFLPTHHE ESSYSYLLWS HQGAIAGPET GNMCDAHPIP SPDEQQDDNE  60
LIDMLFREAS YLLQDDLSNG GDPFASLDGC LCLAGQENVS MVATVQEEPM EGDSLGNLLV  120
ACAMAVEARD STTASAILSR VDSLLTHGVS HRSYHHAAVD SASDILAGYF ARGLHSRMSS  180
GARRTAAAPA LPENRMPAYR ALQELSPFIK FAHFTANQAI LEAAAADDGP DLHVVDLNVG  240
EGVQWASLMA DLARTGGKST FRLTAVITDP DAGRGCMAAR WLSEFAESLN LPFRYSSLHL  300
RDEEDLHSFA AESCNDSPVI ISCDTTDCSY SSVIKLQTLL LRSVKILQPK LVVLVEDELL  360
RIGRTNQSTP GLALGSFAEF FRDALHHFAA VLDSLASGFC DGGYGACLDL VEREMLGLRI  420
EDAVARYQAA AMTGDMQGLR PCDLSSFNVA QAKMLVGLFS RGFGVVHEAG RLALCWNSKP  480
LTSVSVWSRP VLDPGVAMPC SVNDTSDLRS IEAEVSRTQV ASQAVLFRAL VFGFSAGGEM  540
STCRTEVART DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2910648810379Protein SCARECROW
5b3h_A2e-291064889378Protein SCARECROW
5b3h_D2e-291064889378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809511.10.0nodulation-signaling pathway 2 protein-like isoform X2
TrEMBLA0A2S3H6390.0A0A2S3H639_9POAL; Uncharacterized protein
TrEMBLA0A2T7E5E90.0A0A2T7E5E9_9POAL; Uncharacterized protein
STRINGPavir.Ca00212.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.11e-33RGA-like protein 3