PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00097.1.g00920.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 548aa MW: 59619.8 Da PI: 11.0455 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.6 | 4.7e-15 | 236 | 267 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++Cg+ +T +WR+gp g+ tLCnaCG++ + Zjn_sc00097.1.g00920.1.am.mk 236 CVQCGSAETLQWRSGPLGQGTLCNACGVRLKA 267 ****************************9986 PP | |||||||
2 | GATA | 47.8 | 1.9e-15 | 365 | 399 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+Tp+WR+gp g tLCnaCG+++r +l Zjn_sc00097.1.g00920.1.am.mk 365 CLHCGSTSTPQWREGPMGRHTLCNACGVRHRQGRL 399 99*****************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.888 | 230 | 284 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.5E-14 | 230 | 281 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-12 | 230 | 283 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.5E-12 | 231 | 280 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.14E-10 | 235 | 285 | No hit | No description |
Pfam | PF00320 | 1.4E-12 | 236 | 267 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 236 | 261 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-14 | 358 | 417 | No hit | No description |
SMART | SM00401 | 5.2E-16 | 359 | 413 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.85 | 359 | 395 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 362 | 397 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.12E-12 | 364 | 411 | No hit | No description |
Pfam | PF00320 | 3.1E-13 | 365 | 399 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 365 | 390 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MHPYRPSGSP TAPMLPGRPT VLAGIREKFS GFCDTQRKKK SSSSLSRLSF LWLLLTPGRY 60 SLVRSLTRRR HHRLPVAAYP AAVHGDGGGR GRTSGTAVQP PGLGPRTRRS TATRDMDGAA 120 AAVGGGKEEE EEERPLVYVL GLAVALSLPV AVSRLDAGVP RKARTSRPRQ KPAARWCAFR 180 MPVPLVRKGK KKSREKARSP RPQRQRVCLA LGVPPPPDLD AAASSVERTA KKARRCVQCG 240 SAETLQWRSG PLGQGTLCNA CGVRLKAAGA LRETEQRSPP ATQRMVAEPP PPPSESPALE 300 SSPDSPIRQR RVSLRDIYLV RKQPARERRT PRKEPAPAPA PAIYLVKKKK PSRKPWRPRD 360 TGRQCLHCGS TSTPQWREGP MGRHTLCNAC GVRHRQGRLL PEYRPAASPT FVPSEHASKH 420 REVLQLRRQQ QNSKQPEPVV SDDFPSDRRV DGTGNSGDAP ESDEDDKDNV FLLRREPPEK 480 DPYPPTRQLP PPVDNDNPRS GGGGDNGAVA GCSGGNHVTA DAPSTLDSLL LDGPSAPLIV 540 DGDHFLVS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805140.1 | 1e-114 | pollen-specific leucine-rich repeat extensin-like protein 2 | ||||
TrEMBL | A0A0A9D6L5 | 1e-143 | A0A0A9D6L5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J37525.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7273 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 5e-29 | GATA transcription factor 9 |