PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00097.1.g00920.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 548aa    MW: 59619.8 Da    PI: 11.0455
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00097.1.g00920.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.64.7e-15236267132
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                                   C++Cg+ +T +WR+gp g+ tLCnaCG++ + 
  Zjn_sc00097.1.g00920.1.am.mk 236 CVQCGSAETLQWRSGPLGQGTLCNACGVRLKA 267
                                   ****************************9986 PP

2GATA47.81.9e-15365399135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +Cg+t+Tp+WR+gp g  tLCnaCG+++r  +l
  Zjn_sc00097.1.g00920.1.am.mk 365 CLHCGSTSTPQWREGPMGRHTLCNACGVRHRQGRL 399
                                   99*****************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.888230284IPR000679Zinc finger, GATA-type
SMARTSM004017.5E-14230281IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12230283No hitNo description
Gene3DG3DSA:3.30.50.104.5E-12231280IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-10235285No hitNo description
PfamPF003201.4E-12236267IPR000679Zinc finger, GATA-type
PROSITE patternPS003440236261IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14358417No hitNo description
SMARTSM004015.2E-16359413IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.85359395IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14362397IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.12E-12364411No hitNo description
PfamPF003203.1E-13365399IPR000679Zinc finger, GATA-type
PROSITE patternPS003440365390IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MHPYRPSGSP TAPMLPGRPT VLAGIREKFS GFCDTQRKKK SSSSLSRLSF LWLLLTPGRY  60
SLVRSLTRRR HHRLPVAAYP AAVHGDGGGR GRTSGTAVQP PGLGPRTRRS TATRDMDGAA  120
AAVGGGKEEE EEERPLVYVL GLAVALSLPV AVSRLDAGVP RKARTSRPRQ KPAARWCAFR  180
MPVPLVRKGK KKSREKARSP RPQRQRVCLA LGVPPPPDLD AAASSVERTA KKARRCVQCG  240
SAETLQWRSG PLGQGTLCNA CGVRLKAAGA LRETEQRSPP ATQRMVAEPP PPPSESPALE  300
SSPDSPIRQR RVSLRDIYLV RKQPARERRT PRKEPAPAPA PAIYLVKKKK PSRKPWRPRD  360
TGRQCLHCGS TSTPQWREGP MGRHTLCNAC GVRHRQGRLL PEYRPAASPT FVPSEHASKH  420
REVLQLRRQQ QNSKQPEPVV SDDFPSDRRV DGTGNSGDAP ESDEDDKDNV FLLRREPPEK  480
DPYPPTRQLP PPVDNDNPRS GGGGDNGAVA GCSGGNHVTA DAPSTLDSLL LDGPSAPLIV  540
DGDHFLVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805140.11e-114pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A0A9D6L51e-143A0A0A9D6L5_ARUDO; Uncharacterized protein
STRINGPavir.J37525.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.15e-29GATA transcription factor 9