PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00096.1.g00310.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 485aa    MW: 53174.9 Da    PI: 9.8424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00096.1.g00310.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-05121143123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ Cg +F++   L  H+r+H
  Zjn_sc00096.1.g00310.1.sm.mk 121 HRCHTCGAVFPSGQALGGHMRRH 143
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-86892IPR007087Zinc finger, C2H2
SuperFamilySSF576674.17E-769143No hitNo description
PROSITE profilePS5015710.7836996IPR007087Zinc finger, C2H2
SMARTSM003550.196991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
PfamPF139125.4E-13120145IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494121148IPR007087Zinc finger, C2H2
SMARTSM003550.012121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF514452.9E-50218479IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.808.1E-50219478IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MATAPTAPAD VLLRLLSPPP SNNTAITNHQ QQQQGKSKTP RFLSLSLSPA SKVVAKGRST  60
KRARPDGAFQ CRTCGRRFAT FQALGGHRTS HNRARVRADG LDLVLGARSD GKAAAAKGSV  120
HRCHTCGAVF PSGQALGGHM RRHRAAAETE MAIVGLSSQE MDWENDECNR DQYKYGDALP  180
SPSTKSKATA LQPRSPFVAT NISFLCFVLF FCGQQATAAK TGQLTVFWGR NRSQGTLSEA  240
CDTGLYVFGR GRYCTDLSGY DVSHLGADVK HGQRAKNVTV LLSIGVDSGR YSLPTARSAR  300
EVAEHLWHAY LSGHRTGVFR PFGDAVFGGI DFYMGGTEER HYAELARILA RRRRRGSSST  360
AMHLTASPPC SHVFYEQPAA LEAMMGSLER LNVRFYNESM CGYDYHETRP FWGAWTPWSS  420
RFPAATRLHV ALPAADGFTG WIDPTTLRES VLPSVQDHAS YGGVVLWDRY YDKVSGYGRA  480
LRDVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1om0_A7e-582184822271Xylanase Inhibitor Protein I
1ta3_A7e-582184822271xylanase inhibitor protein I
1te1_A7e-582184822271xylanase inhibitor protein I
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616532.11e-109xylanase inhibitor protein 1-like
TrEMBLQ53NL81e-108Q53NL8_ORYSJ; Chitinase III C10701-rice
STRINGOS11T0702200-011e-109(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-21C2H2 family protein