PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00096.1.g00300.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 156aa MW: 17050.3 Da PI: 10.4667 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + L H +H Zjn_sc00096.1.g00300.1.sm.mk 44 FQCRTCGRRFATFQALGGHRTSH 66 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 17.9 | 8.5e-06 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F++ L H+r+H Zjn_sc00096.1.g00300.1.sm.mk 95 HRCNTCGTVFPTGQALGGHMRRH 117 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.3E-9 | 43 | 68 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.699 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.82E-8 | 44 | 117 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-12 | 94 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.034 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MDHTTSRTTT NFLQLLSLSL SPASKSKVIL KGKTTRRVRL DGAFQCRTCG RRFATFQALG 60 GHRTSHKRPR VRADGLDLLL GARPGKASAA CRNVHRCNTC GTVFPTGQAL GGHMRRHRAA 120 EEFDAPALET ASSGLSEDGD DHDDEDIVPR TLIHFI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134045 | 5e-40 | AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence. | |||
GenBank | AK062491 | 5e-40 | AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence. | |||
GenBank | AK105226 | 5e-40 | AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence. | |||
GenBank | AP014967 | 5e-40 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY305866 | 5e-40 | AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds. | |||
GenBank | CP012619 | 5e-40 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. | |||
GenBank | CT833322 | 5e-40 | CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980041.1 | 2e-51 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A368SBJ9 | 4e-50 | A0A368SBJ9_SETIT; Uncharacterized protein | ||||
STRING | Si027432m | 7e-51 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 5e-23 | C2H2 family protein |