PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00094.1.g01160.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 30328.2 Da PI: 7.1353 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl Zjn_sc00094.1.g01160.1.am.mk 15 KGPWTPEEDIVLVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.1e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ +++++ ++lG++ W++Ia++++ Rt++++k++w+++l Zjn_sc00094.1.g01160.1.am.mk 68 RGNFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.247 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.18E-12 | 17 | 62 | No hit | No description |
SMART | SM00717 | 2.4E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.148 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.2E-13 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.28E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGRPPCCDSG VGVKKGPWTP EEDIVLVSYI QQHGPGNWRS VPENTGLMRC SKSCRLRWTN 60 YLRPGIKRGN FTPHEEGIII HLQALLGNKW AAIASYLPQR TDNDIKNYWN THLKKKVKRL 120 QTQPAADSFQ TTPSNAVASP NYFSPGSTHH NFQGMQSMNN YANTTNSTAP VSNEVSDLVQ 180 TWMMRPPPAL TANYKISVQE HQEDQAASGV VCKDQFVFND DKSSSSSGTV AAPVLMGSNT 240 ATFSLLEDWL LDDMPGQAMD GLMGISGGCC ADPIMF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-26 | 15 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083881 | 1e-156 | BT083881.1 Zea mays full-length cDNA clone ZM_BFb0050H17 mRNA, complete cds. | |||
GenBank | EU955550 | 1e-156 | EU955550.1 Zea mays clone 1536772 mRNA sequence. | |||
GenBank | KJ727611 | 1e-156 | KJ727611.1 Zea mays clone pUT5518 MYB transcription factor (MYB61) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979484.1 | 1e-162 | transcription factor MYB30 | ||||
Swissprot | B3VTV7 | 3e-87 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A1E5V910 | 1e-161 | A0A1E5V910_9POAL; Myb-related protein 306 | ||||
STRING | Si026733m | 1e-161 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 8e-84 | myb domain protein 60 |
Publications ? help Back to Top | |||
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