PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00093.1.g01780.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24475.9 Da PI: 9.905 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.5 | 5.6e-26 | 75 | 125 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie++ nrqvtfskRr+g++KKA+EL +LCda++ vi+f tg+ly++ss Zjn_sc00093.1.g01780.1.am.mkhc 75 KRIESEANRQVTFSKRRAGVFKKAKELATLCDAQIGVIVFTDTGQLYDFSS 125 79***********************************************96 PP | |||||||
2 | K-box | 14.9 | 1.1e-06 | 131 | 173 | 57 | 98 |
K-box 57 qLekslkkiR.skKnellleqieelqkkekelqeenkaLrkkl 98 +Le ++++ + ++ ll+qie+ kk +++en++L++k+ Zjn_sc00093.1.g01780.1.am.mkhc 131 KLEAGITQLAtESEEQTLLDQIEQFNKKASIMNNENEELKRKI 173 78999998862567899************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.525 | 67 | 127 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-25 | 67 | 132 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-34 | 67 | 126 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.92E-30 | 68 | 126 | No hit | No description |
PRINTS | PR00404 | 9.3E-24 | 69 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 69 | 123 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-24 | 76 | 123 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-24 | 89 | 104 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-24 | 104 | 125 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
TDVQPPPFSI LPGLHLERFL PPLQDPRELE STAHLSLSLS GSSPGLSHFS LLSKSLPATG 60 GLKLGVMGRG KTVLKRIESE ANRQVTFSKR RAGVFKKAKE LATLCDAQIG VIVFTDTGQL 120 YDFSSSRRGR KLEAGITQLA TESEEQTLLD QIEQFNKKAS IMNNENEELK RKISIVRQEN 180 NNLKEIYTNL TGKKWSQKMD QHWTFVCIDY YKSYKQT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-16 | 67 | 158 | 1 | 91 | MEF2C |
5f28_B | 3e-16 | 67 | 158 | 1 | 91 | MEF2C |
5f28_C | 3e-16 | 67 | 158 | 1 | 91 | MEF2C |
5f28_D | 3e-16 | 67 | 158 | 1 | 91 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020962192.1 | 3e-32 | MADS-box transcription factor 27 isoform X7 | ||||
Refseq | XP_025668876.1 | 3e-32 | MADS-box transcription factor 27 isoform X7 | ||||
Swissprot | Q6EP49 | 6e-25 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1E5VGQ1 | 8e-33 | A0A1E5VGQ1_9POAL; MADS-box transcription factor 27 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP35660 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 9e-27 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|