PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00093.1.g00680.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 372aa    MW: 40274.4 Da    PI: 5.8006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00093.1.g00680.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.6e-1590137148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++lv     +G  +W+ +++  g+ R++k+c++rw +yl
  Zjn_sc00093.1.g00680.1.am.mk  90 KGPWTAEEDQKLVGFLLTHGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 137
                                   79******************************99************97 PP

2Myb_DNA-binding44.73e-14147209547
                                   -HHHHHHHHHHHHHTTTT.....................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGgg.....................tWktIartmgkgRtlkqcksrwqky 47 
                                   + +E++l +d+++qlG++                      W++Ia++++ gRt++++k++w+++
  Zjn_sc00093.1.g00680.1.am.mk 147 SDDEEKLVIDLHAQLGNRctsfhvfrwlnlvffaplrvgWWSKIAARLP-GRTDNEIKNHWNTH 209
                                   89***********************************************.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2081138IPR009057Homeodomain-like
PROSITE profilePS5129419.09685141IPR017930Myb domain
SMARTSM007173.0E-1189139IPR001005SANT/Myb domain
SuperFamilySSF466893.14E-2190141IPR009057Homeodomain-like
PfamPF002491.9E-1390137IPR001005SANT/Myb domain
CDDcd001678.49E-992137No hitNo description
Gene3DG3DSA:1.10.10.602.1E-20139214IPR009057Homeodomain-like
PROSITE profilePS5129412.537142214IPR017930Myb domain
SMARTSM007173.2E-9142212IPR001005SANT/Myb domain
CDDcd001677.55E-9147210No hitNo description
PfamPF002492.9E-11147209IPR001005SANT/Myb domain
SuperFamilySSF466893.14E-21183211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAPSETGSHV RRAPPSLAAT WGAAPAGSLV FVSINPSPCA APSLPGTETG SSEQAIRHCA  60
AREAAPGENE RAVYCCTSWQ PCCDKVGVKK GPWTAEEDQK LVGFLLTHGH CCWRVVPKLA  120
GLLRCGKSCR LRWTNYLRPD LKRGLLSDDE EKLVIDLHAQ LGNRCTSFHV FRWLNLVFFA  180
PLRVGWWSKI AARLPGRTDN EIKNHWNTHI RKKLLRMGID PVTHQPLPQA PASPVQEQKE  240
HAEPPPPPQP QPQQAQEQPL RTDGEAQQEV EAEGRQDLPL IQPDEIPAPP PAASSVSSAS  300
GSVFSPSCSS SASASAASGV EATEWPEPMY LFGMDGIMDA GWGGLFLGDG GVSLDPFDQY  360
PGGGFDQGDD WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-24902144105C-Myb DNA-Binding Domain
1msf_C5e-24902144105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074831e-113AK107483.1 Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence.
GenBankFJ9402171e-113FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds.
GenBankJX2359281e-113JX235928.1 Oryza sativa Japonica Group Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813949.11e-108protein ODORANT1-like
SwissprotQ9C7U71e-75MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A0A9ESB71e-107A0A0A9ESB7_ARUDO; Uncharacterized protein
TrEMBLA0A2S3HKQ71e-107A0A2S3HKQ7_9POAL; Uncharacterized protein
STRINGPavir.Da01229.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-76myb domain protein 85
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]