PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00093.1.g00440.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-X1
Protein Properties Length: 1096aa    MW: 118438 Da    PI: 8.0226
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00093.1.g00440.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.15.9e-06366383118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG+H+C+  CH+GpC++C
  Zjn_sc00093.1.g00440.1.am.mk 366 CGNHSCKDMCHPGPCGEC 383
                                   ****************** PP
2zf-NF-X120.51e-06424441118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG H+C+ +CHeG+C pC
  Zjn_sc00093.1.g00440.1.am.mk 424 CGVHRCKVTCHEGECLPC 441
                                   ****************** PP
3zf-NF-X116.32.2e-05519537119
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                   CG+H Cq lCH G CppC 
  Zjn_sc00093.1.g00440.1.am.mk 519 CGQHVCQLLCHSGHCPPCL 537
                                   ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578505.44E-7122195No hitNo description
PROSITE profilePS500168.76129191IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.406132189IPR001841Zinc finger, RING-type
PROSITE patternPS013590132188IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.61E-4222285No hitNo description
SMARTSM004380.023247265IPR000967Zinc finger, NF-X1-type
PfamPF014228.2249264IPR000967Zinc finger, NF-X1-type
CDDcd060084.82E-12292340No hitNo description
SMARTSM004380.0022302321IPR000967Zinc finger, NF-X1-type
PfamPF014229.3E-4302319IPR000967Zinc finger, NF-X1-type
CDDcd060084.93E-9356399No hitNo description
SMARTSM004383.5E-4366385IPR000967Zinc finger, NF-X1-type
PfamPF014229.6E-4366383IPR000967Zinc finger, NF-X1-type
CDDcd060087.86E-12414462No hitNo description
SMARTSM004387.7E-4424443IPR000967Zinc finger, NF-X1-type
PfamPF014222.8E-5424441IPR000967Zinc finger, NF-X1-type
CDDcd060081.78E-9509561No hitNo description
SMARTSM004381.1E-4519538IPR000967Zinc finger, NF-X1-type
PfamPF014224.1E-4519536IPR000967Zinc finger, NF-X1-type
CDDcd060081.87E-4566614No hitNo description
SMARTSM004380.34576594IPR000967Zinc finger, NF-X1-type
PfamPF0142263576592IPR000967Zinc finger, NF-X1-type
SMARTSM004380.044629664IPR000967Zinc finger, NF-X1-type
PfamPF014220.0039629644IPR000967Zinc finger, NF-X1-type
PfamPF014225.1666692IPR000967Zinc finger, NF-X1-type
SMARTSM004380.16673694IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1096 aa     Download sequence    Send to blast
LPLPTPASDT RPPQRRSRRP NNNRRNQPPQ EQSNGTGDHP RAPPATQDRN TGGGREAEDR  60
NGDAGQNQRA PPSTQDDHSG GAGHRRRGQR QERPRPAAPA PMLAPAALGG DGTMPQLVQE  120
IQDKLARGAV ECMICYDMVR RSAPIWSCGS CYSIFHLPCI RKWARSPASV ADASPEATAS  180
ASWRCPGCQT VMSTPARDLS YTCFCGRRRE PPNDLFLTPH SCGEPCSKPL EKVDPGVKGE  240
DADATRCPHV CVLQCHPGPC PPCKAFAPDR RCPCGKQIIV RRCADRSTPV TCGQPCERLL  300
PCGRHHCEKV CHTGPCGDCA VLISAQCFCG KKKEALLCGD MMVKGKLSEE KGVFSCSEVC  360
DHTLTCGNHS CKDMCHPGPC GECELMPRKV TTCHCGKTRL QEIRASCLDP IPTCDKVCDK  420
KLPCGVHRCK VTCHEGECLP CLVRVEQRCR CSSSGRMLEC YKVSKEEFLC NKPCGRKKNC  480
GRHRCSECCC PLSKPLAQHE GSDWDPHLCQ LTCGKKLRCG QHVCQLLCHS GHCPPCLETI  540
FTDLTCACGR TSIPPPLPCG TPTPSCPHKC SVPQPCGHPA SHSCHFGDCP PCVVPVVREC  600
IGGHVMLRNI PCGSKDIRCN QPCGKKRQCG IHACSRTCHP APCDQPPADG DASSSSGGNA  660
SCGQVCGAAR KECKHTCTAP CHPSSPCPDL RCEFPVTITC SCGRITATVP CGAGGASNGD  720
NMFEVSIIQK LPMPLQPVES NGRRVPLGQR KLSCDEECAK MEKKRVLAEA FDITPPNLDA  780
LHFGENSSAS DLVSDLFRRE PKWVMAIEER CKFLVLGKMR GNSSSSLKLH VFCHMMKDKR  840
DAIRLIAERW KLSVQSAGWE PKRFVTIHVT PKSKPPARIL GSKAGAPVTA AQPYFDPLVD  900
MDPRLVVAML DLPRDADVNA LVLRFGGECE LVWLNDKNAV AVFNDPARAA TALRRLDYGS  960
AYQGATMFMS NSSVQPGNVW VGTQKDGGIA SKSNPWKSTA SVEPSSSSGD WTGVPGHTLS  1020
SGWSGVNAAA LVAGTANRWS VLETDAATSS GRGDERMPAP HSYAAHSTTT NTGDDGPSVR  1080
KLQPEVEVDD WEEAYE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811140.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2T7E1980.0A0A2T7E198_9POAL; Uncharacterized protein
STRINGONIVA06G11110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1