PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00092.1.g01860.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 712aa    MW: 76488.2 Da    PI: 11.8021
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00092.1.g01860.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY78.12.7e-24468518353
                         YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlaka 53 
                                   v+ sseq+Cyv+C fC+t+l+vsvP+tslfk+vtvrCGhC+sll+vn++  
  Zjn_sc00092.1.g01860.1.am.mk 468 VVPSSEQLCYVHCHFCDTVLVVSVPTTSLFKTVTVRCGHCSSLLTVNMRGL 518
                                   5689*****************************************999765 PP
2YABBY31.84.5e-1067071290134
                         YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134
                                    sa++s ++++++  ++++ +r+  +   PekrqrvPsaynrfik
  Zjn_sc00092.1.g01860.1.am.mk 670 ASARSSAPATSVTAVQQQQQQRA--TRMSPEKRQRVPSAYNRFIK 712
                                   34444444444444445544443..34689**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.1E-24471526IPR006780YABBY protein
PfamPF046904.6E-8676712IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MMRKERSRGS RPGRSPAGDI ACMLRDRAGL GVFVGRMAMH GGACTPRARA RQLVVDRSSS  60
ACVRAWSVAA CRARRAWMWQ QRDGTARMHA CICCPLPRRA VEMQGTGGYV RMRQQGGTAP  120
ILPSYARSGS PALGVGITRH LVRASTCGRP SFRARRAGSA GPKATVRSDS PYHHAIHRSI  180
DRRRGSRQAR PSSGQPTWSP GCRSLRATWL DATRLVSIRS TQAYTRPWKS APSQQLGSAL  240
HVGTHVMQMQ DRSGGGRRRG SYDEEAAQRP AGKRRSPSGA SQLTAATVVT GDTAQGGDDE  300
PGKTDFDCRA RRDRAIDRAD AARSTSPTGR PLLVCHDSYA LGGISRVDEE EYGMGSSTRV  360
PPFHSRTPPP RSALFVRWLP RQIELLATKK KTHLLAFLLR VLCCCFRQVI PAIDRSVGWW  420
LSVGMSSSSS SSSAASAAVV FPPSPQPQMP QPLLVENLPP LNQLSPVVVP SSEQLCYVHC  480
HFCDTVLVVS VPTTSLFKTV TVRCGHCSSL LTVNMRGLLF PGTPTNIGAA AAAPASVTSA  540
VTTTTTTAIT TPPVITSVNN NDHQFHFPNS LNLAPNPPHQ HSILDEISSA HPSFPLLEQQ  600
GLSGLISGAR NVVTAPAPPP PLLVAGKGAK EPSPRTNNAV ANRLSGSAGA RPPLLLSRDV  660
TASRRALARA SARSSAPATS VTAVQQQQQQ RATRMSPEKR QRVPSAYNRF IK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388392KKKTH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3139043e-63AY313904.1 Zea mays yabby10 protein mRNA, complete cds.
GenBankEU9711533e-63EU971153.1 Zea mays clone 358521 axial regulator YABBY1 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2285556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.16e-13YABBY family protein