PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00092.1.g01310.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 30621.9 Da PI: 11.2642 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.3e-11 | 31 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ ++++G g +W + +t++ R++ +c+srw++yl Zjn_sc00092.1.g01310.1.am.mk 31 KGKWSKEEDRLIRSHIEKHGIGrSWQA-LSTLQ--RCGRSCRSRWLNYL 76 79******************999****.77887..9***********97 PP | |||||||
2 | Myb_DNA-binding | 34.9 | 3.5e-11 | 83 | 126 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+ Ed+++ + ++G+ W+ I + ++ gRt+ +k++w++ Zjn_sc00092.1.g01310.1.am.mk 83 GNFTPAEDKIICEMYSKMGSC-WSVITAQLP-GRTDLAVKNYWNST 126 89*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.65E-24 | 29 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 10.185 | 29 | 76 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2E-7 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-9 | 31 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 32 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-8 | 33 | 76 | No hit | No description |
PROSITE profile | PS51294 | 18.069 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-11 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-9 | 83 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.29E-8 | 84 | 127 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 84 | 130 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MCPFRRQGGN LSPAGGRVQY TSRGGAMVMK KGKWSKEEDR LIRSHIEKHG IGRSWQALST 60 LQRCGRSCRS RWLNYLRPGL KHGNFTPAED KIICEMYSKM GSCWSVITAQ LPGRTDLAVK 120 NYWNSTLKKR FRPAARTAAF ARRRPHPSPT ASTSDAGTPA RDLQLVVHSD ESSTAGSSCA 180 QPILPSSPTS VKAVHPLGPV GAGREPIEAV PVRVSAPVRT EVGGAASDDA NGAATTGKEW 240 SDRWDGHGHH LRAHVTPPSG LHGPRAGLLM RVRRHPQLLA LV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-23 | 29 | 131 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661280.1 | 3e-77 | transcription factor RAX2 | ||||
TrEMBL | A0A368SIM7 | 7e-76 | A0A368SIM7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia01569.1.p | 1e-70 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 2e-42 | myb domain protein 87 |