PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00092.1.g01310.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 282aa    MW: 30621.9 Da    PI: 11.2642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00092.1.g01310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-113176148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd l+   ++++G g +W +  +t++  R++ +c+srw++yl
  Zjn_sc00092.1.g01310.1.am.mk 31 KGKWSKEEDRLIRSHIEKHGIGrSWQA-LSTLQ--RCGRSCRSRWLNYL 76
                                  79******************999****.77887..9***********97 PP

2Myb_DNA-binding34.93.5e-1183126247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   g++T+ Ed+++ +   ++G+  W+ I + ++ gRt+  +k++w++ 
  Zjn_sc00092.1.g01310.1.am.mk  83 GNFTPAEDKIICEMYSKMGSC-WSVITAQLP-GRTDLAVKNYWNST 126
                                   89*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-2429123IPR009057Homeodomain-like
PROSITE profilePS5009010.1852976IPR017877Myb-like domain
SMARTSM007172.2E-73078IPR001005SANT/Myb domain
PfamPF002491.5E-93176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-183283IPR009057Homeodomain-like
CDDcd001672.33E-83376No hitNo description
PROSITE profilePS5129418.06977131IPR017930Myb domain
SMARTSM007177.0E-1181129IPR001005SANT/Myb domain
PfamPF002491.1E-983126IPR001005SANT/Myb domain
CDDcd001678.29E-884127No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2184130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MCPFRRQGGN LSPAGGRVQY TSRGGAMVMK KGKWSKEEDR LIRSHIEKHG IGRSWQALST  60
LQRCGRSCRS RWLNYLRPGL KHGNFTPAED KIICEMYSKM GSCWSVITAQ LPGRTDLAVK  120
NYWNSTLKKR FRPAARTAAF ARRRPHPSPT ASTSDAGTPA RDLQLVVHSD ESSTAGSSCA  180
QPILPSSPTS VKAVHPLGPV GAGREPIEAV PVRVSAPVRT EVGGAASDDA NGAATTGKEW  240
SDRWDGHGHH LRAHVTPPSG LHGPRAGLLM RVRRHPQLLA LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-232913125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.13e-77transcription factor RAX2
TrEMBLA0A368SIM77e-76A0A368SIM7_SETIT; Uncharacterized protein
STRINGPavir.Ia01569.1.p1e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-42myb domain protein 87