PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00091.1.g01090.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 502aa    MW: 54954.6 Da    PI: 7.5579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00091.1.g01090.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-14186233148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT++Ed++lv  +   G  +W+++++  g+ R++k+c++rw +yl
  Zjn_sc00091.1.g01090.1.am.mk 186 KGPWTADEDQKLVSFILGNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 233
                                   79******************************99************97 PP
2Myb_DNA-binding45.61.6e-14243307547
                                   -HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                                   ++ E++l vd+++qlG++                        W++Ia++++ gRt++++k++w+++
  Zjn_sc00091.1.g01090.1.am.mk 243 SEAEEKLVVDLHAQLGNRchahatprfilltellsfrcstrEWSKIASRLP-GRTDNEIKNHWNTH 307
                                   899************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-19177235IPR009057Homeodomain-like
PROSITE profilePS5129419.633181237IPR017930Myb domain
SMARTSM007172.6E-10185235IPR001005SANT/Myb domain
SuperFamilySSF466893.56E-21186237IPR009057Homeodomain-like
PfamPF002491.6E-12186233IPR001005SANT/Myb domain
CDDcd001675.78E-8188233No hitNo description
Gene3DG3DSA:1.10.10.603.6E-20236312IPR009057Homeodomain-like
PROSITE profilePS5129412.246238312IPR017930Myb domain
SMARTSM007171.5E-10238310IPR001005SANT/Myb domain
PfamPF002492.6E-11242307IPR001005SANT/Myb domain
CDDcd001671.32E-8243308No hitNo description
SuperFamilySSF466893.56E-21280309IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MGGVLNSSNP SFQEPPTGNP DEVLEITTQT AAHSRSGQPE RSKRGGASEL TREKPATERV  60
GAGGGSAASP LLHIASGKAG LAGSTSEKKR PFCDGECRFC RLALVASGFR EPCVFADLVI  120
DDLHVVSCLT RPVPCSSPPL LPYKGSQFLI TCVSEQRGVF SVLDQKLTSQ LKMGRQPCCD  180
KVGLKKGPWT ADEDQKLVSF ILGNGHCCWR AVPKLAGLLR CGKSCRLRWT NYLRPDLKRG  240
LLSEAEEKLV VDLHAQLGNR CHAHATPRFI LLTELLSFRC STREWSKIAS RLPGRTDNEI  300
KNHWNTHIKK KLRKMGIDPV THKPLLQPTQ LQQLSPAEAR PPTPERQRQP KPNTVPAEAA  360
TRSSSQNDKE EHPPLLSKSP GFCTDEVPMM HPDEITMLSP CNDDQPAEPA SISTPTTSHS  420
AASASSSCDK EATLFPAMDE WPDTLSLVGL DDMMIAAPPS PWDEYPVQPL SPVFVDPCFG  480
AYPYQRTGAA FEQEAWNKLE LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-231843125108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0362299e-97BT036229.1 Zea mays full-length cDNA clone ZM_BFb0101M11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572214.11e-109transcription factor MYB20
TrEMBLI1I7771e-108I1I777_BRADI; Uncharacterized protein
STRINGBRADI3G36370.11e-109(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-81myb domain protein 43