PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00090.1.g00150.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 264aa    MW: 27762.1 Da    PI: 4.3522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00090.1.g00150.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183586156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Zjn_sc00090.1.g00150.1.am.mk 35 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 86
                                  5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-283594No hitNo description
PROSITE profilePS5103221.5623693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-293693IPR001471AP2/ERF domain
SMARTSM003803.1E-323699IPR001471AP2/ERF domain
PfamPF008479.2E-113685IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-213693IPR016177DNA-binding domain
PRINTSPR003671.4E-83748IPR001471AP2/ERF domain
PRINTSPR003671.4E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNFSSYFFSS SSSDKKPSSK RRQQQQPSAP DANTTRYLGV RRRPWGRYAA EIRDPATKER  60
HWLGTFDTAE EAAVAYDRAA RSLRGARART NFAYPDLPPG SSITPYLSPD LTSGDVNSAQ  120
LLQPFYADPA AAAAALPNPA ANGAVKDDYE YGYGAYGDAD MASLMDDIAI PDDLSAMGGD  180
SGSSMMDMSS AYGSGGGSNA GAGGGWCDAS EFGGYGASTT TASGAHGVYF EEGYVHSPLF  240
SPMPAVDDAC ADGFQLGGSS SYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-183292162ATERF1
3gcc_A5e-183292162ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276701e-121KJ727670.1 Zea mays clone pUT5597 AP2-EREBP transcription factor (EREB91) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975472.11e-111ethylene-responsive transcription factor LEP
TrEMBLK3YEC41e-110K3YEC4_SETIT; Uncharacterized protein
STRINGPavir.Gb01913.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-24ERF family protein