PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00089.1.g00380.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 605aa    MW: 66481.1 Da    PI: 8.787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00089.1.g00380.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25e-15226274148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W+ eEd  l+++++++G+g +W + ++++g++R++k+c++rw++yl
  Zjn_sc00089.1.g00380.1.am.mk 226 KGPWSLEEDAMLKNYIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 274
                                   79*********************************************97 PP
2Myb_DNA-binding36.41.2e-11281323246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T+eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
  Zjn_sc00089.1.g00380.1.am.mk 281 GDFTPEEDSVICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 323
                                   789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.793221274IPR017930Myb domain
SuperFamilySSF466895.47E-26224321IPR009057Homeodomain-like
SMARTSM007172.7E-12225276IPR001005SANT/Myb domain
PfamPF002494.7E-14226274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-22227281IPR009057Homeodomain-like
CDDcd001674.15E-9228274No hitNo description
PROSITE profilePS5129421.102275329IPR017930Myb domain
SMARTSM007171.3E-10279327IPR001005SANT/Myb domain
PfamPF002496.6E-10281323IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-22282329IPR009057Homeodomain-like
CDDcd001674.14E-7283325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MDFGQVSLAS KPAGVPQRAC QARFVVQGSE THGPPGIRVL DLGTQYSAAA DCGRLGLVAI  60
DRSLPPLVRG GTRLAEYNCC RSTSFGFNGD RWCPISVVLP MTHCPSSSSS KNAEHAGPGA  120
AKETKSILAK YTETRAPVSL VCHQHEQSGQ VKPYPYVFLS PLSCPYKTMG AGGHPTPCPP  180
NQTHHHSTAQ SRLPEKRPPR RRERREKKRK TKMGRAPCCD KATVKKGPWS LEEDAMLKNY  240
IEEHGTGGNW IALPHKIGLK RCGKSCRLRW LNYLRPNIKH GDFTPEEDSV ICSLYISIGS  300
RWSIIAAQLP GRTDNDVKNY WNTKLKKRLL GRRKDRPEAH RPSAAVVANE TAAEMNDGER  360
ALSASAMERI QLCMQLQELQ NPLGAAIQTP ALTTWPASCR AAIQSNNSFN SNNSAGSSVT  420
VAEPGQCSYV NDHHLNARLV ESAAMDGLAS PSSAENSNVI SIEAELQELL YGEADQQLRA  480
GAIDDGMQQQ QQQGDMDWWS YDQSKPVNCW DFTPEPNAVF QDYASNPDIY RQECDGITSR  540
AALCLSLADI WASHGLRTAC QRRGVVKSTA AERMPAGPAR SFRVKARTVC VDRSRSRHFA  600
SMLTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-222263297108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209RREKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117881e-119AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973097.11e-160transcription factor MYB36
TrEMBLK3YMV21e-158K3YMV2_SETIT; Uncharacterized protein
STRINGSi015585m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-75myb domain protein 36