PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00089.1.g00340.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 269aa MW: 27281.3 Da PI: 6.4998 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.8 | 1.4e-05 | 15 | 57 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ + +C + lC C H H++vpl Zjn_sc00089.1.g00340.1.am.mk 15 ACAVCGGA-AAVYCAADAAALCGPCDAIVHAAnplasrHDRVPL 57 6******9.******************99*66889999999986 PP | |||||||
2 | CCT | 69.5 | 8.6e-24 | 183 | 226 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a Zjn_sc00089.1.g00340.1.am.mk 183 REARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 226 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.7E-10 | 11 | 57 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.93 | 16 | 57 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.6E-18 | 183 | 225 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.638 | 183 | 225 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MMGSEGSTSS GAGTACAVCG GAAAVYCAAD AAALCGPCDA IVHAANPLAS RHDRVPLSTA 60 AAAASGVYDD LFAADDVDAA SSWTLPPAPG KQGQGSPQGS SETSITTSDS GADGRSLFDL 120 LSDVELAACV TGGGGGAAPV HHCAAPFWAP PGLAAWTPAW SPTDAATVVV PGSAAVVAAA 180 AEREARVQRY REKRKNRKFQ KTIRYASRKA YAEARPRIKG RFVKRAPAAA PGNDAGDAAK 240 FWLSFSDDAR DDAIGFYVDA GVYGVVPSF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068390 | 5e-63 | BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds. | |||
GenBank | KJ727888 | 5e-63 | KJ727888.1 Zea mays clone pUT5981 orphans transcription factor (Orphan319) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973094.1 | 1e-101 | zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | K3YJ05 | 1e-100 | K3YJ05_SETIT; Uncharacterized protein | ||||
STRING | Si014224m | 1e-100 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13066 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 3e-14 | CONSTANS-like 5 |