PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00089.1.g00340.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 269aa    MW: 27281.3 Da    PI: 6.4998
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00089.1.g00340.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.81.4e-051557542
                      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                   C+ ++   +  +C  +   lC  C    H        H++vpl
  Zjn_sc00089.1.g00340.1.am.mk 15 ACAVCGGA-AAVYCAADAAALCGPCDAIVHAAnplasrHDRVPL 57
                                  6******9.******************99*66889999999986 PP

2CCT69.58.6e-24183226144
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                   Rea+++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a
  Zjn_sc00089.1.g00340.1.am.mk 183 REARVQRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 226
                                   9*****************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.7E-101157IPR000315B-box-type zinc finger
PROSITE profilePS501198.931657IPR000315B-box-type zinc finger
PfamPF062034.6E-18183225IPR010402CCT domain
PROSITE profilePS5101716.638183225IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMGSEGSTSS GAGTACAVCG GAAAVYCAAD AAALCGPCDA IVHAANPLAS RHDRVPLSTA  60
AAAASGVYDD LFAADDVDAA SSWTLPPAPG KQGQGSPQGS SETSITTSDS GADGRSLFDL  120
LSDVELAACV TGGGGGAAPV HHCAAPFWAP PGLAAWTPAW SPTDAATVVV PGSAAVVAAA  180
AEREARVQRY REKRKNRKFQ KTIRYASRKA YAEARPRIKG RFVKRAPAAA PGNDAGDAAK  240
FWLSFSDDAR DDAIGFYVDA GVYGVVPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0683905e-63BT068390.1 Zea mays full-length cDNA clone ZM_BFb0159K08 mRNA, complete cds.
GenBankKJ7278885e-63KJ727888.1 Zea mays clone pUT5981 orphans transcription factor (Orphan319) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973094.11e-101zinc finger protein CONSTANS-LIKE 1
TrEMBLK3YJ051e-100K3YJ05_SETIT; Uncharacterized protein
STRINGSi014224m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130662224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-14CONSTANS-like 5