PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00088.1.g01930.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 334aa MW: 36499.3 Da PI: 6.426 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.3 | 3.8e-14 | 144 | 193 | 8 | 57 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +r+ NRe+ArrsR+RK+ + Le v L+aeN +L k+l ++++++ Zjn_sc00088.1.g01930.1.sm.mkhc 144 IRMLANRESARRSRRRKQIHLNDLESQVSMLTAENASLLKRLVDMTEKYK 193 6999********************************99977766666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.5E-10 | 130 | 201 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.06E-10 | 144 | 191 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 145 | 159 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.726 | 145 | 191 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-11 | 145 | 193 | No hit | No description |
Pfam | PF00170 | 1.0E-11 | 145 | 193 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 3.1E-18 | 209 | 314 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEKSCRDARQ KSGSFPRTAG FSGDEVAEVG CSYAAALKRE LDLYCAAVAK SMDAKSQESS 60 LGYPNSQASA SSELISQASF HGDRDGASLF INSHIIDNAD SQGMSANTGI LKEQSGDGDD 120 LEEITNPANL KKMRRITMLN LHFIRMLANR ESARRSRRRK QIHLNDLESQ VSMLTAENAS 180 LLKRLVDMTE KYKDATFDNQ NLIVDLAMMR RKVHIAEEAV RVTGASMLLP PTTSDMPVSS 240 MPLTSCASDA ASLAVPVQEN MHPFLQQPLI HGNQFKLDLP NATISLSSRE MITMAVSLRG 300 VASMENLQKT IHKDSVHSGT ALPLSDPEAL NDDK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 160 | RRSRRRKQ |
2 | 155 | 160 | SRRRKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805357.1 | 1e-118 | light-inducible protein CPRF2-like | ||||
TrEMBL | A0A2T7EIZ5 | 1e-118 | A0A2T7EIZ5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00258.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7595 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.1 | 3e-20 | bZIP family protein |