PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00087.1.g00420.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 220aa MW: 23745.8 Da PI: 10.6749 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.1 | 6.4e-23 | 115 | 159 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 daepgrCrRtDGKkWRCsr++++++ +CErH++rgr rsrk++e Zjn_sc00087.1.g00420.1.sm.mk 115 DAEPGRCRRTDGKKWRCSRDAVGDQRYCERHINRGRYRSRKHVEG 159 79****************************************986 PP | |||||||
2 | QLQ | 58.1 | 2.7e-20 | 55 | 91 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++ Zjn_sc00087.1.g00420.1.sm.mk 55 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 91 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-12 | 55 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.308 | 56 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.9E-14 | 56 | 89 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.422 | 115 | 159 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.4E-19 | 116 | 158 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MALPAPSSSC SFVGSAATSS GGPRMLSFSS SNGGAGLGLS SGASNMQGVL SRVRGPFTPT 60 QWMELEHQAL IYKHFAVNAP VPSSLLLPIK RSFNPWGTFG SSSLGWAQFR PGCSDAEPGR 120 CRRTDGKKWR CSRDAVGDQR YCERHINRGR YRSRKHVEGQ KATPTIAGEA MAVSTMSNTV 180 AWQQQLKCSA ANATNPFPRE SNSFSLFLTQ KQDPPVAMNV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827128.1 | 1e-103 | growth-regulating factor 8-like isoform X1 | ||||
Refseq | XP_025827130.1 | 1e-103 | growth-regulating factor 8-like isoform X3 | ||||
Swissprot | Q6AWY1 | 1e-84 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A0A9UY24 | 1e-105 | A0A0A9UY24_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Hb00712.1.p | 1e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37740.1 | 3e-51 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|