PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00087.1.g00420.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 220aa    MW: 23745.8 Da    PI: 10.6749
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00087.1.g00420.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.16.4e-23115159145
                           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                   daepgrCrRtDGKkWRCsr++++++ +CErH++rgr rsrk++e 
  Zjn_sc00087.1.g00420.1.sm.mk 115 DAEPGRCRRTDGKKWRCSRDAVGDQRYCERHINRGRYRSRKHVEG 159
                                   79****************************************986 PP

2QLQ58.12.7e-205591137
                           QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                  ++FT++Q+++L++Q+l+yK++a n+PvP+ Ll++i++
  Zjn_sc00087.1.g00420.1.sm.mk 55 GPFTPTQWMELEHQALIYKHFAVNAPVPSSLLLPIKR 91
                                  59*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-125591IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.3085691IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.9E-145689IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.422115159IPR014977WRC domain
PfamPF088793.4E-19116158IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MALPAPSSSC SFVGSAATSS GGPRMLSFSS SNGGAGLGLS SGASNMQGVL SRVRGPFTPT  60
QWMELEHQAL IYKHFAVNAP VPSSLLLPIK RSFNPWGTFG SSSLGWAQFR PGCSDAEPGR  120
CRRTDGKKWR CSRDAVGDQR YCERHINRGR YRSRKHVEGQ KATPTIAGEA MAVSTMSNTV  180
AWQQQLKCSA ANATNPFPRE SNSFSLFLTQ KQDPPVAMNV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827128.11e-103growth-regulating factor 8-like isoform X1
RefseqXP_025827130.11e-103growth-regulating factor 8-like isoform X3
SwissprotQ6AWY11e-84GRF8_ORYSJ; Growth-regulating factor 8
TrEMBLA0A0A9UY241e-105A0A0A9UY24_ARUDO; Uncharacterized protein
STRINGPavir.Hb00712.1.p1e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129602731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-51growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]