PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00087.1.g00290.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 229aa    MW: 25177.2 Da    PI: 4.9808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00087.1.g00290.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161264148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                                  +g+WT+eEd  lv +++q+G+++W+++++          Rt++++k++w+++l
  Zjn_sc00087.1.g00290.1.am.mk 12 KGPWTPEEDIVLVSYIQQHGPRNWRAVPENTAiasylPQRTDNDIKNYWNTHL 64
                                  79********************9987555444444444************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.374768IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-22868IPR009057Homeodomain-like
SuperFamilySSF466897.9E-16971IPR009057Homeodomain-like
SMARTSM007171.8E-121166IPR001005SANT/Myb domain
PfamPF002494.4E-141264IPR001005SANT/Myb domain
CDDcd001673.64E-141464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRPPCCENV KKGPWTPEED IVLVSYIQQH GPRNWRAVPE NTAIASYLPQ RTDNDIKNYW  60
NTHLKKKVKR LQTQPADSIQ TTPSNALSSL NYYSSGSTQH DFQGMQSLNN YPSTASIGSE  120
TTATTVSDLV QKWKMRPSPA LTVANYKIAM QEFQEDQAAA AVVCNDGHFV FNDDRSSSSS  180
GTMAPVMMGC SSTATFSLLE DWLLDDMQGQ AMDGIVGISG CCCADPIMF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979484.15e-94transcription factor MYB30
SwissprotB3VTV74e-34MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A1E5V9102e-94A0A1E5V910_9POAL; Myb-related protein 306
STRINGSi026733m2e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.15e-33myb domain protein 31
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]