PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00086.1.g02660.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARR-B
Protein Properties Length: 434aa    MW: 47913.2 Da    PI: 8.1169
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00086.1.g02660.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.23.7e-28176229155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Zjn_sc00086.1.g02660.1.am.mkhc 176 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 229
                                     79*******************.********************************8 PP
2Response_reg62.12.8e-211810325109
                                     EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS
                    Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101
                                      v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga d+l Kp
  Zjn_sc00086.1.g02660.1.am.mkhc  18 AVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGACDYLLKP 95 
                                     577888888999999877778*******************87754.558****************************** PP

                                     --HHHHHH CS
                    Response_reg 102 fdpeelvk 109
                                     +  e+l++
  Zjn_sc00086.1.g02660.1.am.mkhc  96 VRLEQLRT 103
                                     *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.6121109IPR001789Signal transduction response regulator, receiver domain
SMARTSM004482.6E-151105IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.4E-3113124No hitNo description
SuperFamilySSF521721.1E-2515114IPR011006CheY-like superfamily
PfamPF000725.4E-1817104IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.25E-2219108No hitNo description
SuperFamilySSF466893.4E-20173233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-30173234IPR009057Homeodomain-like
PROSITE profilePS5129411.34173232IPR017930Myb domain
TIGRFAMsTIGR015577.5E-25176229IPR006447Myb domain, plants
PfamPF002491.4E-6178228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MLPVFGSRAN VFDVCDVAVT TTGQAATALK LLREKKDQFD LVISDVHMPD MDGFKLLELV  60
GLEMDLPVIM LSANGETQTV MKGITHGACD YLLKPVRLEQ LRTIWQHVVR RRSCDAKNHG  120
NENDDMGKKA MNAEGENGGA NRNKRTSRKV RDDNGDDGDD SDENSNENGD SATQKKPRVV  180
WSVELHRKFV AAVNQLGIDK AVPKKILDLM NVENITRENV ASHLQKYRLY LKRLSADASR  240
QANLTAALGG RNPAYINMGL EAFKHYNAYG RYRPIPTSNH SPNNLLARMN SPSAFGMHSL  300
LPSQPLQIGY NQNNLSASLG NVGGMSNGGI PSLQDGRIDQ QAVSNQLNYN NELMGRRRLQ  360
RGLSGGLDDI VVDMFRPEHA VDGIPFIEGD WEVMLQKHPR LAEAFSNLPF PSPPLLLPSS  420
PSISTLPRTT SPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-25174235364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotA2X1N20.0ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A1E5VNB30.0A0A1E5VNB3_9POAL; Two-component response regulator ORR24 (Fragment)
STRINGSi016630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-83response regulator 12