PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00086.1.g02450.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 32947 Da PI: 10.6647 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.5e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + Zjn_sc00086.1.g02450.1.am.mk 12 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd +++a+++lG++ W++Iar ++ gRt++ +k++w++ Zjn_sc00086.1.g02450.1.am.mk 64 RRPFTAEEDAAILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 107 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.139 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-31 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-17 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-18 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.25E-16 | 14 | 56 | No hit | No description |
SMART | SM00717 | 4.6E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.395 | 64 | 113 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.8E-15 | 64 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.46E-13 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 66 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGGAEAECDR IKGPWSPEED EALRRLVERH GARNWTAIGR GIPGRSGKSC RLRWCNQLSP 60 RVERRPFTAE EDAAILRAHA RLGNRWAAIA RLLPGRTDNA VKNHWNSSLK RKLPTATNNA 120 EAERPCKRVS PAPGSPTGSS DRSELSHGSV GGGGAQVFRP VPRAGGFNAI RAADVRPAPP 180 PTTTSRRDED PLTSLSLSLP GQQDQQGSSG FRHDSARSHF HELSPSRSPS PPSPLTPPAE 240 ASSSQPLPYP FSGELMAAMQ EMIRAEVRKY LSGPGLRAGC GPGAVGEACV VDGVMRAAAE 300 RVGVVTRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-41 | 9 | 115 | 4 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00653 | PBM | Transfer from LOC_Os02g09480 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002451692.1 | 1e-146 | transcription factor MYB44 | ||||
Swissprot | Q9FDW1 | 3e-68 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A3L6RS06 | 1e-152 | A0A3L6RS06_PANMI; Uncharacterized protein | ||||
STRING | Sb04g005940.1 | 1e-145 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-67 | myb domain protein r1 |