PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00086.1.g00740.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 23978.5 Da PI: 7.8633 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.1 | 7.3e-12 | 11 | 54 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g++T+ Ed+ + + ++G+ W+ Ia+ ++ gRt+ +k++w++ Zjn_sc00086.1.g00740.1.am.mk 11 GNFTPAEDKVICEMYSKMGSC-WSVIAAQLP-GRTDLAIKNYWNST 54 89*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-22 | 2 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-15 | 2 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.266 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-11 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-10 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.04E-9 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
LNYLRPGLKH GNFTPAEDKV ICEMYSKMGS CWSVIAAQLP GRTDLAIKNY WNSTLKKRFR 60 WVRTAARRRP RPSPTGSTSS DARTPAQDLQ LIVYSEESST AGSSCAKPVL PSSPTSAKAV 120 KLLAPVAAGR EPIEAVPVRA NAPVRTEQKP SVESLPLMTP TAPPPPADRR DHTDQSDEMA 180 MDIISMPMSP IPLGFMDLEL ACICGFDDID NFLPWFDGH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791626.1 | 6e-78 | myb-related protein Pp2-like | ||||
TrEMBL | A0A3L6TU28 | 7e-78 | A0A3L6TU28_PANMI; Transcription factor RAX2-like | ||||
STRING | Si037244m | 7e-72 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 6e-23 | myb domain protein 87 |