PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00086.1.g00610.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 416aa MW: 42553.7 Da PI: 9.9946

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00086.1.g00610.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	99.2	2.8e-31	253	306	5	58
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 ++cprC s+ntkfCyynnys sqPry+C+aCrr+Wt+GG+lr+vPvGggr+++ Zjn_sc00086.1.g00610.1.am.mkhc 253 PRQCPRCGSANTKFCYYNNYSRSQPRYLCRACRRHWTEGGTLRDVPVGGGRKNR 306 679**********************************************97654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	26.021	254	308	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-29	254	306	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	256	292	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-16	261	299	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
ILLTGEEELA GSEKSRALRA PTSSSSPVPV AVARHHPSKL YTRQARACMR CRGSTHGLAE 60 FILRRKEASD ALGAAEAAPP DPSRPIEAAA GGVSGCPQCA LFAVAPAGLR LFLSAIEEQL 120 CRRGRLINGP APTCTERHRG TPAAASAPRS TTPSPPSATS CRGRRRAAGT AMPSSSFLAA 180 SPSSSASSLP YLIPARPPSL LTGQGHGVNS DVGGVPTSGV GDIVVSAASS VAPPSTGSRH 240 AGARHPPQPR PPPRQCPRCG SANTKFCYYN NYSRSQPRYL CRACRRHWTE GGTLRDVPVG 300 GGRKNRRGGG GGAAAKASSS SAPVLPLGAG NGSADVAFPD VLRQVLFQPV GSVSGAGYSI 360 DLSSWQQMTA ATAPPQGTGG DANGALGLGG TSTMDAHCGA LQYWSGWQQD DVPGLD

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

ILLTGEEELA GSEKSRALRA PTSSSSPVPV AVARHHPSKL YTRQARACMR CRGSTHGLAE  60
FILRRKEASD ALGAAEAAPP DPSRPIEAAA GGVSGCPQCA LFAVAPAGLR LFLSAIEEQL  120
CRRGRLINGP APTCTERHRG TPAAASAPRS TTPSPPSATS CRGRRRAAGT AMPSSSFLAA  180
SPSSSASSLP YLIPARPPSL LTGQGHGVNS DVGGVPTSGV GDIVVSAASS VAPPSTGSRH  240
AGARHPPQPR PPPRQCPRCG SANTKFCYYN NYSRSQPRYL CRACRRHWTE GGTLRDVPVG  300
GGRKNRRGGG GGAAAKASSS SAPVLPLGAG NGSADVAFPD VLRQVLFQPV GSVSGAGYSI  360
DLSSWQQMTA ATAPPQGTGG DANGALGLGG TSTMDAHCGA LQYWSGWQQD DVPGLD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967243	9e-75	EU967243.1 Zea mays clone 300623 hypothetical protein mRNA, complete cds.
GenBank	KJ727985	9e-75	KJ727985.1 Zea mays clone pUT6101 C2C2-DOF transcription factor (DOF13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A317Y5C3	3e-55	A0A317Y5C3_MAIZE; Dof zinc finger protein PBF

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-17	OBF binding protein 1