PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00086.1.g00230.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 528aa    MW: 56142.2 Da    PI: 9.348
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00086.1.g00230.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.42.1e-25346410256
                       G2-like   2 prlrWtpeLHerFveaveqLGG..........sekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                    r++W+peLH+ F++a++qLGG          ++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Zjn_sc00086.1.g00230.1.am.mk 346 LRRCWSPELHRLFLQALQQLGGaqgwypshpaPDLATPKQIRELMKVEGLTNDEVKSHLQKYRLH 410
                                   69********************4444443333367****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.93E-15343413IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-25343413IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-21345410IPR006447Myb domain, plants
PfamPF002491.5E-6347408IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MARSGLAPLG RAELLRNLPV PAGPASLASP GPRLSAPGGP WQILPPNPRG GAGESVANIP  60
ARPNKSQKIH LLRDGPTPTP SPRLRLSLSL SLSLSLSVSV RPVLEMGMDP PPPQPPSLHA  120
DAAGDRRRCR EYLLALEEER RKIQVFQREL PLCLDLVTQS TQLLPLAIER IKLEMDGVGS  180
EETVSDRGPV LEEFMPLKPS LSLSSSEEHD SARDTSGGVG KEAEAADTPP EMKKATPDWL  240
QSVRLWSQEP QHQRTTSSSH KELPCKPVAL NARKAGGAFQ PFEKEKRVEM PASSTTAAAS  300
STVAGDSGDK AVASMDTEKH SSDDKETTNK DGTGKDKEGQ SPSRKLRRCW SPELHRLFLQ  360
ALQQLGGAQG WYPSHPAPDL ATPKQIRELM KVEGLTNDEV KSHLQKYRLH TRRPNSTVPT  420
SSTSAATPAP QVFVVGGIWV PPPEYAVAAA AAAAAAHPPV QQPTADASGG ASTVYAPVAT  480
LPSGAQTQSR ELRAVKKQPN RFSDGRSAGD ASSASPAVSS SSSQTTSA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954868.31e-149transcription factor NIGT1
SwissprotQ6Z8691e-119NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A0A9G3F31e-155A0A0A9G3F3_ARUDO; Uncharacterized protein
STRINGSi019945m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-48G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]