PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00083.1.g00220.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 203aa MW: 20944.9 Da PI: 8.2092

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00083.1.g00220.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.6	1.1e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ +l++++a+pe++r+++++sl+yeA r+ +Pv+ Zjn_sc00083.1.g00220.1.am.mkhc 2 SCNGCRVLRKGCSEGCVLRPCLqwidtAEAQGHATVFVAKFFGRAGLLSFITAVPEDQRPALFQSLLYEAAGRTINPVN 80 6*******************9999777889******************************************* PP DUF260 75 Gavgvilklqqqleqlkaelall 97 Gavg++ +++++l+q+++e++l+ Zjn_sc00083.1.g00220.1.am.mkhc 81 GAVGLLGTGNWHLCQAAVETVLR 103 ***************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.438	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDTAE AQGHATVFVA KFFGRAGLLS FITAVPEDQR 60 PALFQSLLYE AAGRTINPVN GAVGLLGTGN WHLCQAAVET VLRGGTIGPL PELGGTGDLY 120 GPAKRTGGWS TFSTAKRVRK GAEAPAATSC DLGLCLSPGS PPAAGERRAL LRPGTPSMSS 180 DESVTTTGGG GGEKDPVLLN LFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650230.1	1e-122	PREDICTED: LOB domain-containing protein 37
Swissprot	Q9FN11	6e-69	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A0A9DMH3	1e-120	A0A0A9DMH3_ARUDO; Uncharacterized protein
STRING	OPUNC03G21330.1	1e-118	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-69	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]