PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00079.1.g00940.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 221aa MW: 24390.3 Da PI: 5.9847

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00079.1.g00940.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67.1	4e-21	23	93	28	98
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 kf++vhk FGa nv kll+++p++++++a+ s++yeA+ar+ dPvyG+++ il+lq q+ +l+ael lk Zjn_sc00079.1.g00940.1.sm.mk 23 TKFEMVHKKFGAGNVAKLLDKIPQQNHPEAVFSICYEAQARLCDPVYGCANQILALQDQVWNLQAELTNLK 93 79****************************************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.148	1	96	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-20	22	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MGAEEEEEEG QWGLQVSAVQ GITKFEMVHK KFGAGNVAKL LDKIPQQNHP EAVFSICYEA 60 QARLCDPVYG CANQILALQD QVWNLQAELT NLKIHLAEME LARQSTFVVE PQTSIAKTFP 120 VSNLLTPSNI LAIVDHSPLS ELQTQSQQHR HLHQQKFVQG RGSIVGNNSD LQENENSTVG 180 GSLHRLPEHG HLESIVAYCQ SHQAAWHHVS NSPHEAASLA A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-15	24	89	39	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-15	24	89	39	104	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021307456.1	1e-28	LOB domain-containing protein 30
TrEMBL	A0A1E5UT08	1e-32	A0A1E5UT08_9POAL; LOB domain-containing protein 18
STRING	XP_008798540.1	3e-27	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP66540	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	1e-27	LBD family protein