PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00078.1.g02610.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SRS

Protein Properties

Length: 548aa MW: 57657.5 Da PI: 10.4188

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00078.1.g02610.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212.2	1.3e-65	348	486	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkq 83 +g++sCqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpa+krrerqqqla+ a++ skr+r++ ++ Zjn_sc00078.1.g02610.1.am.mk 348 AGSISCQDCGNQAKKDCVHMRCRTCCKSRGFDCPTHVKSTWVPATKRRERQQQLATG--------AAEPSKRPRDQ---RS 417 6889***********************************************9987........56788999985...44 PP DUF702 84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 sa+ +t+ ss+ +++++ +++P+evsseavfrc+r++ vd++e+e+aYqt+vsi+GhvfkGiL+d G++ Zjn_sc00078.1.g02610.1.am.mk 418 SATPTTTASSG-EQQQMVGERFPREVSSEAVFRCLRLGPVDEDEAEVAYQTTVSIAGHVFKGILHDIGPD 486 45555555555.566788889*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.1E-61	350	486	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-27	352	394	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.0E-22	437	485	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MFLALQSGAD DFYLPIRSNQ ASKSRSLSRT TSRRSKAAVA SKLAERRERT ETTDSRAGGV 60 RGLKRPDGSE ERRVSGAVSS FPTSPSLSNG SKEKPGSSAA LCARRRPSPA AAPKPPARLG 120 RLDLYAPRML STIEDMRIVG GVAGPLFPVV SFPFITHPTP PHKRTDSTRS LARGTLASFD 180 FDPKAAASCC SRRRDLLIKL GKQNSSALPR HAVYLVTAMR ITPARGRRPI DTGDPASDPP 240 LPGGAYGSGR MAGFPLGGGG GHGRGYNHPP INPSSGAESS AAAEAAAAYL YTTATAPPRG 300 GGFQLWPQHH HPFQEHSFYA SNVIRFADDP AAGSSSSSRG GRGSGLGAGS ISCQDCGNQA 360 KKDCVHMRCR TCCKSRGFDC PTHVKSTWVP ATKRRERQQQ LATGAAEPSK RPRDQRSSAT 420 PTTTASSGEQ QQMVGERFPR EVSSEAVFRC LRLGPVDEDE AEVAYQTTVS IAGHVFKGIL 480 HDIGPDPSVA GGGMMIRHAA EGSSPSTVAA GEGSVSATAP GSSSAVVMDP YPTPGPYGGS 540 SFFHGHPR

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MFLALQSGAD DFYLPIRSNQ ASKSRSLSRT TSRRSKAAVA SKLAERRERT ETTDSRAGGV  60
RGLKRPDGSE ERRVSGAVSS FPTSPSLSNG SKEKPGSSAA LCARRRPSPA AAPKPPARLG  120
RLDLYAPRML STIEDMRIVG GVAGPLFPVV SFPFITHPTP PHKRTDSTRS LARGTLASFD  180
FDPKAAASCC SRRRDLLIKL GKQNSSALPR HAVYLVTAMR ITPARGRRPI DTGDPASDPP  240
LPGGAYGSGR MAGFPLGGGG GHGRGYNHPP INPSSGAESS AAAEAAAAYL YTTATAPPRG  300
GGFQLWPQHH HPFQEHSFYA SNVIRFADDP AAGSSSSSRG GRGSGLGAGS ISCQDCGNQA  360
KKDCVHMRCR TCCKSRGFDC PTHVKSTWVP ATKRRERQQQ LATGAAEPSK RPRDQRSSAT  420
PTTTASSGEQ QQMVGERFPR EVSSEAVFRC LRLGPVDEDE AEVAYQTTVS IAGHVFKGIL  480
HDIGPDPSVA GGGMMIRHAA EGSSPSTVAA GEGSVSATAP GSSSAVVMDP YPTPGPYGGS  540
SFFHGHPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821984.1	1e-125	protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A3L6PPK2	1e-130	A0A3L6PPK2_PANMI; Protein SHI RELATED SEQUENCE 1-like
STRING	Si015301m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	6e-50	Lateral root primordium (LRP) protein-related