PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g01920.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 355aa    MW: 39215.4 Da    PI: 10.5812
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g01920.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind342.41.1e-10413411300
                     GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..............rernlalsekkaavaerd........ 57 
                                   mdddg    rn+g+ye     k nlglqlms +a +rd+k+                 n+  +++++++++rd        
  Zjn_sc00078.1.g01920.1.sm.mk   1 MDDDGGLGiRNWGFYETV---KGNLGLQLMSPVApDRDTKTllpnstflqhhghqTAPNQRQHHHQHSHQPRDfgagggga 78 
                                   999999999******988...**********9999******9*******988865445666677778888888******** PP

                     GAGA_bind  58 ............maflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtk.sidslqqlse....p 117
                                               m+f++++++l+  +++   +++k+l+  ++ +++      ++p ++q++++++ +++ ++   +    p
  Zjn_sc00078.1.g01920.1.sm.mk  79 sgavsteshsvhMDFARNEAWLHPSQQHQRAHEHKVLHFGPAGHGVHpghvRHNPISYQMMQDARrNLQIMEA-AQpqpqP 158
                                   ********************************************9989998999**99999887614555554.2224558 PP

                     GAGA_bind 118 qledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlv 197
                                   ql+++++    +ee  +   +e++  + +e++ +kkrq++++pk++k kk+kk  ++++++ ++++  +r++ +kk +++v
  Zjn_sc00078.1.g01920.1.sm.mk 159 QLQQPQELpPCKEEGASPALVEDHSMVRNEQQPVKKRQQSRQPKSPKPKKPKK-AAVPQEDGAPNRPAPRARGPKKAVGMV 238
                                   8887766547788889999999999999*************************.78999999999988************* PP

                     GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
                                   +ngv+lD s++P+PvCsCtG+++qCY+WG+GGWqSaCCt +iS+yPLP+stkrrgaRiagrKmS+gafkk+LekL +eGy+
  Zjn_sc00078.1.g01920.1.sm.mk 239 INGVNLDLSRIPTPVCSCTGTPQQCYRWGAGGWQSACCTNSISTYPLPMSTKRRGARIAGRKMSHGAFKKMLEKLIGEGYN 319
                                   ********************************************************************************* PP

                     GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvti 300
                                   l np+DLk++WAkHGtnkfvti
  Zjn_sc00078.1.g01920.1.sm.mk 320 LDNPIDLKTFWAKHGTNKFVTI 341
                                   *********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.3E-1121341IPR010409GAGA-binding transcriptional activator
SMARTSM012261.6E-1641342IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDDDGGLGIR NWGFYETVKG NLGLQLMSPV APDRDTKTLL PNSTFLQHHG HQTAPNQRQH  60
HHQHSHQPRD FGAGGGGASG AVSTESHSVH MDFARNEAWL HPSQQHQRAH EHKVLHFGPA  120
GHGVHPGHVR HNPISYQMMQ DARRNLQIME AAQPQPQPQL QQPQELPPCK EEGASPALVE  180
DHSMVRNEQQ PVKKRQQSRQ PKSPKPKKPK KAAVPQEDGA PNRPAPRARG PKKAVGMVIN  240
GVNLDLSRIP TPVCSCTGTP QQCYRWGAGG WQSACCTNSI STYPLPMSTK RRGARIAGRK  300
MSHGAFKKML EKLIGEGYNL DNPIDLKTFW AKHGTNKFVT ISQLRTAVKL STGTK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-150protein Barley B recombinant
RefseqXP_021309578.11e-150protein Barley B recombinant
SwissprotQ8GUC31e-127BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B51e-149C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-149(Sorghum bicolor)
STRINGSb02g009782.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.26e-58basic pentacysteine1