PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g00710.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 1124aa    MW: 120902 Da    PI: 7.6952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g00710.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-10428473146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g+W +eEd  l + v+++G  +W++I ++  + R +k+c++rw +
  Zjn_sc00078.1.g00710.1.am.mk 428 KGPWLPEEDAVLRRHVAEHGEQDWSSIQSKGLLDRPGKSCRLRWVN 473
                                   79*************************999889***********87 PP

2Myb_DNA-binding383.8e-12482523245
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   g++++eE+   +d+ +q G++ W+ Ia ++  gRt++++k++w 
  Zjn_sc00078.1.g00710.1.am.mk 482 GKFSPEEERVVLDLQAQVGNK-WAMIATHLH-GRTDNDVKNFWS 523
                                   79*******************.*********.***********5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.550.101.7E-6449319IPR029044Nucleotide-diphospho-sugar transferases
PfamPF092585.1E-6653316IPR015338Exostosin , C-terminal
PROSITE profilePS5129415.119423475IPR017930Myb domain
SuperFamilySSF466893.36E-24426522IPR009057Homeodomain-like
SMARTSM007173.9E-9427477IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-18429482IPR009057Homeodomain-like
CDDcd001674.45E-9430475No hitNo description
PfamPF139211.6E-10431490No hitNo description
PROSITE profilePS5129420.537476530IPR017930Myb domain
SMARTSM007176.4E-11480528IPR001005SANT/Myb domain
CDDcd001671.09E-7483522No hitNo description
Gene3DG3DSA:1.10.10.601.0E-18483528IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006024Biological Processglycosaminoglycan biosynthetic process
GO:0015012Biological Processheparan sulfate proteoglycan biosynthetic process
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1124 aa     Download sequence    Send to blast
MPPRSRHRLR LLFLFLVQLP VVAFARIGAV KEEYAACHAA NRPDEALLRP DRLTVLLSGY  60
SERRLPLLRA IAGAYAAHPL VLTVVVIWCN LATPDSVLHG GGGFPPLVTL HRAASASLNS  120
RFLPDSAILT SAVAVSDDDV LPDAAALSFA FAAWQQQAAR SGGALVGFFP RSHHLDLARG  180
RWAYAGAEPG RYSMVLTKFM VLGADLLRKY SCSPELAAAR AVVDRVRNCE DILMNFVAAD  240
ESGQGPVLVE AGSVRDWGDP RNDANASGDG EAGGAMKDVG LSSTGGTGHW EKRGECITEF  300
HRLLGRMPLR YSYGKLVEAA VGEQGLCSKG GRLNSGERAV SWAVSGCRVP LGLHGQESGV  360
SFPLIRSSQI IGRVGVRAHW PGRSPGELGT ARRENASLAW SRWPRAGGER ARMPPRRRGG  420
GDRPAVKKGP WLPEEDAVLR RHVAEHGEQD WSSIQSKGLL DRPGKSCRLR WVNKLQPGLK  480
GGKFSPEEER VVLDLQAQVG NKWAMIATHL HGRTDNDVKN FWSTRQKRLA RLLLEPPPRR  540
RAVRQNSSSA SSARCRELRA RLQEPCSSIT TFHASTYDGG QSSSQEPNEV EHGVDSRLPG  600
ALCLPAPVDS AVGRGSPSVV PSDETCAENP VPGAGAVGLA SLHHAAFVEP LAAVPTALSF  660
GPEDGSVLCD NEAHCIEPQP LVVIPADPFL HDEYFAAAAA PRRDTSGLRF DDLTPEMLDF  720
IEQICVLSSA RPCPFFVASA CTVPLSTTDV GLFHQPPPCT SPSAIQLIIL CIGPFKTTAH  780
VSSPRHARSQ ASRGPQSRRA RVAVRDWKVG ASRPFQSWNR SITTLRSPLH LSALLRCRAQ  840
LSPRVQIPPA SRRCRTYHSK DERSSTRETE ATGTSRREQS AASEMVVLKE EFGGLSLKRK  900
GADEPELFDV GGDDRSLFPL SCRATKMRRL ASPDGGQDGP GPAVSGGGWV QGQDDQAMGD  960
AAPAPSPAAE EERAVVLYGG PGAPDAAESA SRPRPCSVRV DADWVRAMLR EADSRTVRDL  1020
LAGALEHCDD RALAVVPWVP PSPAEEAEPS TAAEAADGED GDGAAAMDVE EEGEDQVPRW  1080
TGQTTFGSAG AGFGEGCMYR WPQHCMVPPR LPVLGQVSPV MWSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2342452823126MYB TRANSFORMING PROTEIN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1263434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-42MYB family protein