PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00078.1.g00710.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 1124aa MW: 120902 Da PI: 7.6952 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.2 | 5.2e-10 | 428 | 473 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd l + v+++G +W++I ++ + R +k+c++rw + Zjn_sc00078.1.g00710.1.am.mk 428 KGPWLPEEDAVLRRHVAEHGEQDWSSIQSKGLLDRPGKSCRLRWVN 473 79*************************999889***********87 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.8e-12 | 482 | 523 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g++++eE+ +d+ +q G++ W+ Ia ++ gRt++++k++w Zjn_sc00078.1.g00710.1.am.mk 482 GKFSPEEERVVLDLQAQVGNK-WAMIATHLH-GRTDNDVKNFWS 523 79*******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.550.10 | 1.7E-64 | 49 | 319 | IPR029044 | Nucleotide-diphospho-sugar transferases |
Pfam | PF09258 | 5.1E-66 | 53 | 316 | IPR015338 | Exostosin , C-terminal |
PROSITE profile | PS51294 | 15.119 | 423 | 475 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-24 | 426 | 522 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-9 | 427 | 477 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 429 | 482 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.45E-9 | 430 | 475 | No hit | No description |
Pfam | PF13921 | 1.6E-10 | 431 | 490 | No hit | No description |
PROSITE profile | PS51294 | 20.537 | 476 | 530 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-11 | 480 | 528 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-7 | 483 | 522 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 483 | 528 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006024 | Biological Process | glycosaminoglycan biosynthetic process | ||||
GO:0015012 | Biological Process | heparan sulfate proteoglycan biosynthetic process | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1124 aa Download sequence Send to blast |
MPPRSRHRLR LLFLFLVQLP VVAFARIGAV KEEYAACHAA NRPDEALLRP DRLTVLLSGY 60 SERRLPLLRA IAGAYAAHPL VLTVVVIWCN LATPDSVLHG GGGFPPLVTL HRAASASLNS 120 RFLPDSAILT SAVAVSDDDV LPDAAALSFA FAAWQQQAAR SGGALVGFFP RSHHLDLARG 180 RWAYAGAEPG RYSMVLTKFM VLGADLLRKY SCSPELAAAR AVVDRVRNCE DILMNFVAAD 240 ESGQGPVLVE AGSVRDWGDP RNDANASGDG EAGGAMKDVG LSSTGGTGHW EKRGECITEF 300 HRLLGRMPLR YSYGKLVEAA VGEQGLCSKG GRLNSGERAV SWAVSGCRVP LGLHGQESGV 360 SFPLIRSSQI IGRVGVRAHW PGRSPGELGT ARRENASLAW SRWPRAGGER ARMPPRRRGG 420 GDRPAVKKGP WLPEEDAVLR RHVAEHGEQD WSSIQSKGLL DRPGKSCRLR WVNKLQPGLK 480 GGKFSPEEER VVLDLQAQVG NKWAMIATHL HGRTDNDVKN FWSTRQKRLA RLLLEPPPRR 540 RAVRQNSSSA SSARCRELRA RLQEPCSSIT TFHASTYDGG QSSSQEPNEV EHGVDSRLPG 600 ALCLPAPVDS AVGRGSPSVV PSDETCAENP VPGAGAVGLA SLHHAAFVEP LAAVPTALSF 660 GPEDGSVLCD NEAHCIEPQP LVVIPADPFL HDEYFAAAAA PRRDTSGLRF DDLTPEMLDF 720 IEQICVLSSA RPCPFFVASA CTVPLSTTDV GLFHQPPPCT SPSAIQLIIL CIGPFKTTAH 780 VSSPRHARSQ ASRGPQSRRA RVAVRDWKVG ASRPFQSWNR SITTLRSPLH LSALLRCRAQ 840 LSPRVQIPPA SRRCRTYHSK DERSSTRETE ATGTSRREQS AASEMVVLKE EFGGLSLKRK 900 GADEPELFDV GGDDRSLFPL SCRATKMRRL ASPDGGQDGP GPAVSGGGWV QGQDDQAMGD 960 AAPAPSPAAE EERAVVLYGG PGAPDAAESA SRPRPCSVRV DADWVRAMLR EADSRTVRDL 1020 LAGALEHCDD RALAVVPWVP PSPAEEAEPS TAAEAADGED GDGAAAMDVE EEGEDQVPRW 1080 TGQTTFGSAG AGFGEGCMYR WPQHCMVPPR LPVLGQVSPV MWSW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-23 | 424 | 528 | 23 | 126 | MYB TRANSFORMING PROTEIN |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12634 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60460.1 | 1e-42 | MYB family protein |