PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00078.1.g00540.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 161aa MW: 17513.6 Da PI: 9.9676 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.3 | 1.6e-16 | 73 | 107 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kT +WR gp g+ktLCnaCG++y++ +l Zjn_sc00078.1.g00540.1.am.mk 73 CPHCASEKTQQWRTGPLGPKTLCNACGVRYKSGRL 107 9******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.8E-14 | 67 | 117 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.0E-12 | 71 | 104 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.24E-13 | 71 | 131 | No hit | No description |
PROSITE profile | PS50114 | 10.106 | 71 | 103 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.10E-10 | 72 | 119 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 73 | 98 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-14 | 73 | 107 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MASEWEAVDL GMGLVHHHTS NTTTMPPAPS PSSINHQAWQ RSKNKQNLPA APAAGGGGDD 60 PNSRSEDGGV RRCPHCASEK TQQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPAASPTFV 120 LTQHSNSHRK VMELRRQKEL IHLRGTSSSA SSSPFRDYGL C |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574323.1 | 4e-49 | GATA transcription factor 2 | ||||
TrEMBL | A0A287Q1I0 | 2e-48 | A0A287Q1I0_HORVV; Uncharacterized protein | ||||
TrEMBL | I1I637 | 1e-47 | I1I637_BRADI; GATA transcription factor | ||||
STRING | BRADI3G33200.1 | 2e-48 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 5e-47 | GATA transcription factor 2 |