PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00078.1.g00020.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 484aa    MW: 52597.6 Da    PI: 6.5722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00078.1.g00020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042322342323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C +Cgk F  k + ++H +++
  Zjn_sc00078.1.g00020.1.am.mk 322 CRKCGKAFAVKGDWRTHEKNC 342
                                   *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-6236255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.494236263IPR007087Zinc finger, C2H2
SMARTSM003550.48236258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-6304340No hitNo description
Gene3DG3DSA:3.30.160.604.4E-5307340IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621320340IPR007087Zinc finger, C2H2
SMARTSM0035582320340IPR015880Zinc finger, C2H2-like
SMARTSM00355170346369IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEDPYTSFFK NPYYYYTSSF PAPPAAHHLP PSLPPYATLY PAAAPHYVYP AFFQQPPTLP  60
PLDEPSSPSP PLREALPLLS QSPTRCGAGS RPILEADSDS DDDADDFVRG SSSGSHAARV  120
PLLADLNCMP TCCDDDPMDV EAGASTDDAA VALHIGLPLA LGNGCGRTEA DLLSGLSGRA  180
VGACMEPEEE CKVDIDAGDS DEVVPLGFAA TTIGRLNKGQ YWIPTPAQIL IGPTQFPCPV  240
CCKTFNRYNN MQMHMWGHGS QYRKGPESLR GVQPTAMLRL PCYCCAPGCR NNIDHPRARP  300
LKDFRTLQTH YKRKHGLKPF LCRKCGKAFA VKGDWRTHEK NCGKLWYCIC GSEFKHKRSL  360
KDHARAFGHG HGAFGCNVDG TGDGLEDDDE GAVSEIEQDC AGSCRSARVT STEQSINHHL  420
WGLLAGLLRA RTPHLPILLC PFFSTFDGFP FSPEHPLLSM SLACSYPAGV ATLLRSSIPC  480
FAHA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821697.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-116ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1E5V5R30.0A0A1E5V5R3_9POAL; Zinc finger protein WIP2
STRINGPavir.Fa00506.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]