PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00076.1.g00760.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 279aa    MW: 29776.2 Da    PI: 5.3351
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00076.1.g00760.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.17.1e-39261261100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkCa+dC++ap+f ++q +++fa+vh++FGasnv kll+ lp ++r++a+ ++++eA+ar+rdPvyG+v++i
  Zjn_sc00076.1.g00760.1.am.mk  26 PCGACKFLRRKCASDCIFAPHFDQDQgAAQFAAVHRVFGASNVAKLLNYLPIDKRTEAVITICFEAQARLRDPVYGCVSHI 106
                                   7*************************89***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallkee 100
                                   ++lqqq+ +l++el++++++
  Zjn_sc00076.1.g00760.1.am.mk 107 FSLQQQIVNLQSELNYVQNH 126
                                   ****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.49925127IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3826124IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSSSVAGGAG GCGGAGGGSG GGGGGPCGAC KFLRRKCASD CIFAPHFDQD QGAAQFAAVH  60
RVFGASNVAK LLNYLPIDKR TEAVITICFE AQARLRDPVY GCVSHIFSLQ QQIVNLQSEL  120
NYVQNHLAAM EQQQQVLSPA QPLIPMTGAF TELQPASNIQ ANVDKSYLLP TEQQQQYVQM  180
GESSRGAGGS GGTDDLYELA RGLLNRHGRV DGSEEPPQPK HQMWPINEED DEDDDDDDVL  240
RSGSFVVGRG CKGANLLLNK MPGSQLQRRN EASGRVLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-34221277111LOB family transfactor Ramosa2.1
5ly0_B3e-34221277111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9066215e-54KF906621.1 Zoysia japonica microsatellite Zj2008 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024995935.15e-63LOB domain-containing protein 30
TrEMBLA0A1E5UT086e-64A0A1E5UT08_9POAL; LOB domain-containing protein 18
STRINGXP_009604912.17e-61(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.15e-43LBD family protein