PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00071.1.g02520.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 718aa MW: 78490.8 Da PI: 7.04 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+ E++++++a k++G W +I +++g ++t+ q++s+ qk+ Zjn_sc00071.1.g02520.1.am.mkhc 24 RERWTEAEHKRFLEALKLYGRQ-WQRIEEHVG-TKTAVQIRSHAQKF 68 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.47E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.824 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.2E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MEVNSSGEET VVKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRQWQRIE EHVGTKTAVQ 60 IRSHAQKFFT KLEKEAMNNG TSPGKAHDID IPPPRPKRKP NNPYPRKNGL NSETSTKEVS 120 NDKSTKSNIR LSSGNVEMAS HSSLQKLQRK EASEKGSCSE VLNLFREVPS ASFCSVNKTY 180 SNHGAPSGIE QAKTERDMTT LGKNPLSIDA HEGAKEINGS EMEKANGILI SSKSDRPHED 240 YLDTSTQEMK LKPMSVDTAY VGQQTAKTSH SVTEKNGATS VLATGTDGSH ADQTSDHDGA 300 NGRMNPCIHP TFSVDPKFNI NAAPLPCPHN YTALPPMMQC NCNQDAYRSF INMSSTLSSM 360 LVSTLLSNPA IHAAARLAAS YWPASENNTS VDPNQENPTE CVQGSNIGSP PSMASMVAAT 420 VAAASAWWAT QGLLPFFTPP MAFPFAPAPR TAFPTADVRV SEKGRDCQVE NAQKECQEAQ 480 NQDQSESLRV AASSKSDRSG KRDLSLQTEL KISPVQIADT TPTTVADTID AFRNKKKQDR 540 SSCGSNTPSS SDVEGDNVPG KQDKSNDNAK QASCSNSSAG DANNRRFRSS GSTSDSWKEV 600 SEEGRLAFDA LFSREKLPQS FSPPQGGESK EISKEEEDEV TTVTVDLNKN AIAFDHDLDT 660 MDESRASFSN ELSQLKLKSR RTGFKPYKRC SVEAKDNRVP ASDDVGTKRI RLESEAST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00654 | PBM | Transfer from LOC_Os08g06110 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820794.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_025820795.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A2T8IF63 | 0.0 | A0A2T8IF63_9POAL; Uncharacterized protein | ||||
STRING | Sb07g003870.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6031 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 7e-40 | MYB_related family protein |