PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00071.1.g01260.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 130aa    MW: 14308.4 Da    PI: 8.8384
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00071.1.g01260.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD129.71.1e-092952124
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                                    C+gC t+L Y rGA+++RC++C t
  Zjn_sc00071.1.g01260.1.sm.mkhc 29 CNGCPTMLVYNRGATNIRCPNCRT 52
                                    **********************98 PP
2zf-LSD120.86.5e-076892125
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                    Cg C t+L+Y +GA+ V C+ C +V
  Zjn_sc00071.1.g01260.1.sm.mkhc 68 CGRCPTTLAYQLGASTVECPRCRHV 92
                                    ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.1E-102754IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-92952IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-46594IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-76892IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MPDQLYCNTF NTFTSVNPSP AREMSELVCN GCPTMLVYNR GATNIRCPNC RTLNSTRSGA  60
NQMGQLQCGR CPTTLAYQLG ASTVECPRCR HVNPVRDARP QTVLVENPKT LDEKGKLVSN  120
VAVGVTSWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320000.15e-60protein LOL4 isoform X3
RefseqXP_021320001.15e-60protein LOL4 isoform X3
SwissprotQ84UR03e-57LOL4_ORYSJ; Protein LOL4
TrEMBLC5YMW91e-57C5YMW9_SORBI; Uncharacterized protein
STRINGSb07g002500.12e-58(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-26LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]