PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00069.1.g00840.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 567aa    MW: 62311.3 Da    PI: 11.0341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00069.1.g00840.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.44e-19157202147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+W++eEd+ l ++v+++G ++W+tI r+++ gR++k+c++rw + 
  Zjn_sc00069.1.g00840.1.am.mk 157 RGPWSPEEDDMLRRLVERHGARNWTTIGREIP-GRSGKSCRLRWCNQ 202
                                   89******************************.***********985 PP
2Myb_DNA-binding543.9e-17209251145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   r ++T+eEd  +v+a+++lG++ W++Iar ++ gRt++ +k++w+
  Zjn_sc00069.1.g00840.1.am.mk 209 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 251
                                   679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.2E-17156205IPR001005SANT/Myb domain
PROSITE profilePS5129423.865156207IPR017930Myb domain
SuperFamilySSF466892.73E-30156250IPR009057Homeodomain-like
PfamPF002495.2E-18157202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-24158210IPR009057Homeodomain-like
CDDcd001673.46E-15159201No hitNo description
SMARTSM007175.3E-16208256IPR001005SANT/Myb domain
PfamPF002492.0E-14209251IPR001005SANT/Myb domain
PROSITE profilePS5129420.286209258IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-22211258IPR009057Homeodomain-like
CDDcd001675.37E-12211251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MLEDGMDKHG ASRGGGHRRF IRHHQEKNWA SSVWSWARTT ITTSRRCFRG RVVPSPLHFC  60
PAFRLSPSAH LRASARRRRI VFELCSVQVL RVACSELQND KRGRVRLCEV APQFATRALG  120
DSCIAGQVTG RRATINTYRV YLIFSTTTSL PQLLAIRGPW SPEEDDMLRR LVERHGARNW  180
TTIGREIPGR SGKSCRLRWC NQLSPQVERR PFTAEEDAAI VRAHARLGNR WAAIARLLPG  240
RTDNAVKNHW NCSLKRKLAA ANAEPGAEDA VEFERPCKRA NLSPDSPDLS HGASSGSGQI  300
YRPVARSGGF EPVDCAMSRR RHVEDPLTSL SLSLPGMDNG QFQVLPASPS PPPPPPPAAP  360
AAAPVPAAAS YPFNPEFMAA MQDLIRTEVQ RYMVSVGVRA GCGGAALMEG VMRAAAERVG  420
AVGRMHHPCD RTFMRGHLPA GKETADLELA ARRRRRVSEC SHRGTKSKER RGPPRSHVGR  480
PCSGAGRIRL CFRSLARAGG PSQDLSAHHA CEVPRKRCPG KYTVPTAEVL ACHQPPVVCL  540
PARGPWMGTV RSFERELATG RCVDGSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-371502582108B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794291e-128HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-59myb domain protein 73