PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00069.1.g00460.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 191aa MW: 21206.1 Da PI: 9.7217 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.3e-08 | 139 | 172 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+ e++++L +++gL+ +q+ +WF N+R + Zjn_sc00069.1.g00460.1.sm.mkhc 139 KWPYPTDEDKTRLVQETGLQLKQINNWFINQRKR 172 569*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 31 | 75 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.0E-17 | 34 | 71 | IPR005540 | KNOX1 |
PROSITE profile | PS50071 | 11.645 | 113 | 176 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-16 | 115 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-10 | 115 | 180 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-11 | 116 | 177 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 120 | 179 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-18 | 133 | 172 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MMAFQYADHE LGMDAAANPG FGAGVVGSGW EREKAAIAAH PLYERLLEAH VACLRVATPV 60 DQLPRIDAQI AARPPPMAAA AAAAAVGGAQ SGDEELDLFM GYREKLVDIR EEIMRKRRAG 120 KLPGDTASTL KAWWQAHSKW PYPTDEDKTR LVQETGLQLK QINNWFINQR KRNWHNNLAS 180 SSSDKSKRKR S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 189 | RKRNWHNNLASSSSDKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM182386 | 4e-47 | AM182386.2 Zea mays partial mRNA for KNOX family class 2 homeodomain protein (knox7 gene), variant 2. | |||
GenBank | AP004087 | 4e-47 | AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09. | |||
GenBank | AP014958 | 4e-47 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT835439 | 4e-47 | CT835439.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051K01, full insert sequence. | |||
GenBank | EU968524 | 4e-47 | EU968524.1 Zea mays clone 321842 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q0J6N4 | 1e-50 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A3A3U6 | 2e-66 | A3A3U6_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM06G23980.1 | 4e-55 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP46069 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 2e-47 | KNOTTED1-like homeobox gene 3 |