PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00069.1.g00070.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CO-like | ||||||||
Protein Properties | Length: 1115aa MW: 119211 Da PI: 8.1679 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.5 | 1.8e-05 | 779 | 819 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqq.llCedCllee.Hkg..Htvv 40 r+C ++ ++ +C++C+ +lC++C H g H++v Zjn_sc00069.1.g00070.1.am.mk 779 RRCGLCMAAPAAVHCRSCGGvFLCASCDARPaHAGagHERV 819 79****************876********999987889875 PP | |||||||
2 | zf-B_box | 23.6 | 1.1e-07 | 819 | 864 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H+ H+++p+ Zjn_sc00069.1.g00070.1.am.mk 819 VWVCEVCETAPADVMCKADAAVLCAACDADIHEAnplagrHRRDPI 864 689*****************************77899999998876 PP | |||||||
3 | CCT | 68.5 | 1.7e-23 | 1037 | 1080 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ Zjn_sc00069.1.g00070.1.am.mk 1037 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 1080 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52283 | 3.61E-30 | 113 | 240 | No hit | No description |
Gene3D | G3DSA:3.40.50.720 | 5.6E-37 | 113 | 238 | IPR016040 | NAD(P)-binding domain |
Pfam | PF00389 | 9.9E-33 | 116 | 306 | IPR006139 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain |
SuperFamily | SSF51735 | 2.02E-6 | 238 | 308 | IPR016040 | NAD(P)-binding domain |
Gene3D | G3DSA:3.40.50.720 | 1.7E-11 | 240 | 296 | IPR016040 | NAD(P)-binding domain |
Pfam | PF02826 | 5.8E-7 | 240 | 274 | IPR006140 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain |
Gene3D | G3DSA:3.30.1330.90 | 1.6E-19 | 311 | 458 | IPR029009 | Allosteric substrate binding domain |
SuperFamily | SSF143548 | 9.15E-22 | 312 | 458 | IPR029009 | Allosteric substrate binding domain |
SuperFamily | SSF55021 | 3.88E-12 | 454 | 527 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 5.3E-14 | 459 | 526 | No hit | No description |
PROSITE profile | PS51671 | 11.434 | 464 | 539 | IPR002912 | ACT domain |
CDD | cd04902 | 3.35E-20 | 464 | 529 | No hit | No description |
Pfam | PF01842 | 6.8E-9 | 465 | 522 | IPR002912 | ACT domain |
SMART | SM00336 | 0.045 | 776 | 821 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.97E-4 | 779 | 821 | No hit | No description |
PROSITE profile | PS50119 | 10.224 | 817 | 864 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.2E-6 | 818 | 864 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.02E-7 | 820 | 864 | No hit | No description |
SMART | SM00336 | 5.8E-7 | 822 | 864 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.7E-17 | 1037 | 1079 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.896 | 1037 | 1079 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0016616 | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | ||||
GO:0051287 | Molecular Function | NAD binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence Send to blast |
MTKWREMQHA RARRCRTGGG RRTASRTQRA SDSTSPLVNH TLLDCAKPMA LATPLRLILP 60 VAAAPAMPPD PAGPSFRALP PRRCHLRGSL AAAPSPSPAA RTVAASAAAG AGRPTVLVTE 120 KLGSAGLDLL REFANVDCSY ELTTEELRAK VSLVDALVVR SATRVSREVF EAARGRLRVV 180 GRAGVGIDNV DLQAATEVGC LVVNAPTANT VAAAEHAVAL IAAMARNVAQ ADASLKAGTK 240 ACTTAALDVF TEEPPAKDSK LVHHENVTVT PHLGASTTEA QEGVAVEIAE AVIGALRGDL 300 AATAVNAPMV PAEVLSELSP YIILAEKLGR LVVQLVAGGS GIKGVKVVYS SARDPDDLDT 360 RILRAMVIKG IIEPISSAFI NIVNADYVAK QRGLQIVEER ILLDGSQEVP LDSIQVHLAN 420 VESKFAGALS DAGDIRVEGQ VKNGTPHLTF VGSFDVDVSL EGNLLLFRQV DQPGIIGKVG 480 SVLGKMNVNV NFMSVGRTAR GKEAIMAIGV DEELEKEALK LIGFLDAELE TSVLRRLGFI 540 PKSIDQKGPS PTNLAKSLTK SSGKFGVGMN CRKIRRRFRV MAARDVKSFR VLNAAITPTT 600 TPQIRWALRN SKPLWGAPHD MAPAADRQPH EMTASGSSPG TAVNDASAPV ACRGSTRPRW 660 PITVCDYPFI HAKGQPRLVH DADIFLPPPL VRGAHLFTCT NRFPTTCASP ATSPSRTYHY 720 MYRASFHYAP PPPSASLPFP LVLAGANRAE LLATIAKRDR TAPPVTMMEL HKYWGLGGRR 780 CGLCMAAPAA VHCRSCGGVF LCASCDARPA HAGAGHERVW VCEVCETAPA DVMCKADAAV 840 LCAACDADIH EANPLAGRHR RDPIAPIGSA AADSMLFGGA AEEEQKETEH EQHSLNLNVE 900 AKDMKLDYLF SDLDPYLNVE LPRFHHADSV VPSGVAVELD FTGGIGVKQP SYSSYTATSL 960 APSGSSSEVS VVPDALYVGG GHGSFELDFT RPKHQAYIPY TANPPSHSVA SVDAAELVPD 1020 QRGEAFAVPR PVSDEGREAR LMRYREKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRT 1080 DTDTDADDAE AEAEADVPKP SSYMLDFGYS VVPSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2g76_A | 1e-19 | 142 | 238 | 56 | 151 | D-3-phosphoglycerate dehydrogenase |
2g76_B | 1e-19 | 142 | 238 | 56 | 151 | D-3-phosphoglycerate dehydrogenase |
5n6c_A | 1e-19 | 142 | 238 | 30 | 125 | D-3-phosphoglycerate dehydrogenase |
5n6c_B | 1e-19 | 142 | 238 | 30 | 125 | D-3-phosphoglycerate dehydrogenase |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-43 | CONSTANS-like 5 |