PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00068.1.g03540.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 19117 Da PI: 7.1412 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 2.8e-06 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp C+++F++ + H+r+H Zjn_sc00068.1.g03540.1.sm.mk 64 YSCPVCDRHFKTEKAVHGHMRSH 86 99********************9 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00037 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg F ++ L H +H Zjn_sc00068.1.g03540.1.sm.mk 112 YSCEHCGSQFETRQALGGHRASH 134 99**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.03E-7 | 53 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 56 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.806 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 1.6E-6 | 64 | 86 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.19E-5 | 109 | 139 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 111 | 138 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.066 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.113 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.9E-6 | 112 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MDGSTQVFFV GVAYGRLLSS VAGGSGGDEP RQPWHPSSVH EADSAPAQRK QRSTSNTEEG 60 QGPYSCPVCD RHFKTEKAVH GHMRSHPDRA WRGMEEPHPT DPTAMDEKQY RYSCEHCGSQ 120 FETRQALGGH RASHNGKKGC FRLSRQPTAM AAQPRHVLPF DLNDPAPEHQ EE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439063.2 | 6e-53 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A3L6ERH0 | 1e-50 | A0A3L6ERH0_MAIZE; Uncharacterized protein | ||||
STRING | Pavir.J33608.1.p | 1e-51 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13010 | 27 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 5e-14 | C2H2-like zinc finger protein |