PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00068.1.g02030.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 26251.2 Da PI: 9.7869 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.1e-18 | 99 | 153 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le F++++ +s++++ eLA++++Lt rqV vWFqNrRa+ k Zjn_sc00068.1.g02030.1.sm.mk 99 RKKLRLTKEQSTLLEGTFRSHNILSHAQKHELARRVNLTPRQVEVWFQNRRARTK 153 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112 | 4e-36 | 99 | 186 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+keq++lLE +F++++ L++ +K+elar+++l+prqv+vWFqnrRARtk+kq+E+dye Lkr+y++l++en+rL+ Zjn_sc00068.1.g02030.1.sm.mk 99 RKKLRLTKEQSTLLEGTFRSHNILSHAQKHELARRVNLTPRQVEVWFQNRRARTKLKQTEVDYELLKRCYESLTDENQRLK 179 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLr 88 e +++ Zjn_sc00068.1.g02030.1.sm.mk 180 LELVAMQ 186 9987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-19 | 83 | 156 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 85 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 95 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-14 | 97 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.20E-14 | 99 | 156 | No hit | No description |
Pfam | PF00046 | 2.1E-15 | 99 | 153 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.9E-12 | 155 | 198 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.8E-9 | 155 | 184 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MLYKPNCTEK DGLGSWLRLG IGGGCSPRRS HGERWSSVQF DKQEEIGGRD HKQAENKKSD 60 NKSSTRKRSA KAIDDDARSP SRGPSPSEDA HDGGDVGTRK KLRLTKEQST LLEGTFRSHN 120 ILSHAQKHEL ARRVNLTPRQ VEVWFQNRRA RTKLKQTEVD YELLKRCYES LTDENQRLKL 180 ELVAMQRSAA AAGLYVHQFP RAAAADTVSI CPSCDKDTVT SGGETSNKSS TSYCS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 103 | TRKKLRL |
2 | 147 | 155 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966133.1 | 7e-74 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | Q5Z6F6 | 2e-54 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A368QXX7 | 2e-72 | A0A368QXX7_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XZ80 | 1e-72 | K3XZ80_SETIT; Uncharacterized protein | ||||
STRING | Si007238m | 2e-73 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-42 | homeobox from Arabidopsis thaliana |