PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00068.1.g01470.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 685aa    MW: 74537.9 Da    PI: 7.324
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00068.1.g01470.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24114215199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv+++
  Zjn_sc00068.1.g01470.1.sm.mkhc 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGMVWKFRHIYRGTPRRHLLTTGWSTFVNQK 190
                                     89****************************996555555..8999********************************** PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF+  +++++ l+v+++r+
  Zjn_sc00068.1.g01470.1.sm.mkhc 191 KLVAGDSIVFM--RTENGDLCVGIRRA 215
                                     ***********..4588999****997 PP
2Auxin_resp108.85.9e-36273356183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSk 78 
                                     aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++++G Rfkmafeted s++++ +Gtv++v+ +d +rWpnS+
  Zjn_sc00068.1.g01470.1.sm.mkhc 273 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWCAGLRFKMAFETEDLSRISWfMGTVSAVQVADAIRWPNSP 351
                                     688999************************************************************************* PP

                      Auxin_resp  79 WrsLk 83 
                                     Wr+L+
  Zjn_sc00068.1.g01470.1.sm.mkhc 352 WRLLQ 356
                                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-37106219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-29109216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-20113214No hitNo description
PfamPF023622.5E-22114215IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084114216IPR003340B3 DNA binding domain
SMARTSM010191.7E-21114216IPR003340B3 DNA binding domain
PfamPF065073.8E-31273356IPR010525Auxin response factor
PROSITE profilePS5174522.536599679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEREREADKC LDPQLWHACA GGMVQMPPVH SKVYYFPQGH AEHAQGPVEL PAGRVPALVL  60
CRVAGVRYMA DPDTDEVFAK IRLAPVRPNE PGYADDGIGA AAAATAQEDK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GMVWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPEFLHHPP PPGGGNYGGF  240
SMFLRAEEDG NRMMASTRGK VRVRARPEEV VEAANLAVSG QPFEVVYYPR ASTPEFCVKA  300
GAVRAAMRTQ WCAGLRFKMA FETEDLSRIS WFMGTVSAVQ VADAIRWPNS PWRLLQVTWD  360
EPDLLQNVKR VNPWLVELVS NMPAIHLAPF SPPRKKLCVP LYPELPLDGH FPAPMFHGSP  420
LGRGVGPMCY FPDGTPAGIQ GARHAQFGLS LSDLHLNKLQ STLSPHGLHP LDHGAQPRIA  480
AGLIVGHPAA RDDISCLLTI GAPQNKKPAD VRKVAPPQLM LFGKPILTEQ QISLGDAGSF  540
PLAAAAKKSP SDSNAEKTVS DSDTSSPGSN QDATAENLSS GGVTLFQDTN KLLDLGLETG  600
HCKVFMQSED VGRTLDLSVF GSYEELYQRL ADMFGIEKDE LMSHVFYRDA SGTLKHTGDK  660
PFSEFTKTAR RLTILTDPSG DSLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-761137751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966255.10.0auxin response factor 18
RefseqXP_004966256.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A3L6S3T80.0A0A3L6S3T8_PANMI; Auxin response factor
STRINGSi005991m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]