PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00068.1.g00950.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 34434.9 Da PI: 7.8736 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.6 | 5.9e-50 | 19 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee..vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71 lppGfrFhP+d+elv +yL+kk+++ + ++ +vd++k+ePwdLp + kewyf+s rd+kyatg Zjn_sc00068.1.g00950.1.sm.mkhc 19 LPPGFRFHPRDDELVLDYLAKKLHSGGggsvvsI--YGcpTMVDVDLNKCEPWDLPDIACIVGKEWYFYSLRDRKYATG 95 79*********************99987776432..2233699*************64445679*************** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+nrat+sgyWkatgkd+ + + +g lvg++ktLvfykgrapkg+kt+Wvmhe+r Zjn_sc00068.1.g00950.1.sm.mkhc 96 QRTNRATESGYWKATGKDRLISR-NGLLVGMRKTLVFYKGRAPKGKKTEWVMHEFRT 151 *********************99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-59 | 6 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.453 | 19 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-25 | 20 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGSRAMAVMN SLSMVEATLP PGFRFHPRDD ELVLDYLAKK LHSGGGGSVV SIYGCPTMVD 60 VDLNKCEPWD LPDIACIVGK EWYFYSLRDR KYATGQRTNR ATESGYWKAT GKDRLISRNG 120 LLVGMRKTLV FYKGRAPKGK KTEWVMHEFR TEGQGDPTKL PFKEDWVLCR VFYKSRATIA 180 KPHTENSSYN NVDTATTSPP PLVDNYNISF DQPGSVQNIE GYEQVPCFSS NPSQPSSSMN 240 VPRSSSMAAD QKQHMEKSIT DMLMSQFSRF EGNVIKREAP QSNFLQDGFE YLAESGFTEM 300 WNSFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-48 | 6 | 174 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-48 | 6 | 174 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-48 | 6 | 174 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-48 | 6 | 174 | 4 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 6 | 174 | 7 | 168 | NAC domain-containing protein 19 |
4dul_A | 9e-48 | 6 | 174 | 4 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-48 | 6 | 174 | 4 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681432.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-83 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | K3XYG7 | 0.0 | K3XYG7_SETIT; Uncharacterized protein | ||||
STRING | Si006975m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 2e-83 | NAC domain containing protein 1 |