PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00068.1.g00430.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 526aa MW: 55277.4 Da PI: 9.842

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00068.1.g00430.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38	3.6e-12	35	59	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt eLH+rFv+av+qLGG++ Zjn_sc00068.1.g00430.1.am.mk 35 KPRLRWTAELHDRFVDAVAQLGGPD 59 79*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-11	32	63	IPR009057	Homeodomain-like
Pfam	PF14379	2.9E-23	84	129	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MFPSSSKKPS TASANDRPMC VQDDSGGLVL TTDPKPRLRW TAELHDRFVD AVAQLGGPDT 60 MEMQRNVASS SGAMARVMSD RSVNVNEALR IQMEVQRRLH GELEVQKHLQ MRVEAQGKYM 120 QSILEKAYQA LGSSECATWP TGYKSLGSQA AVLDIGGSSM GFSSLQDLHF YGGSSSYMDD 180 QHQLMLQLDQ RPTTMDHNFL TLGESGGSSV SKKGAMPAAS NHCSSTSNSS MMWAGGEEQQ 240 AKSAATGQLQ MGSIMSGDSI GSKAFEGSSS KLEMMSSPPS QQAPPAGNEG MSSPMVGAQA 300 RNMLLCHLLL ADTATASTGN GEARTTTAHP DGAAAAACPA GVTAATALDL AAARDLAAAA 360 AAVATPPAWT LVALETGVGG GLDVGGARDR RRGRVPGGGG GWRRRRQGRG GGPTTLGVSM 420 VTRCDALKIW TGGRVGVAAR RRLDRPARVQ DLTIHLKFAG TTDSSRSIDD GGDSAPPRVR 480 RGMRCPRWIW EVRAAGGSAA RRIRPPSPEK NFGIRGRLVD IAAAVI

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MFPSSSKKPS TASANDRPMC VQDDSGGLVL TTDPKPRLRW TAELHDRFVD AVAQLGGPDT  60
MEMQRNVASS SGAMARVMSD RSVNVNEALR IQMEVQRRLH GELEVQKHLQ MRVEAQGKYM  120
QSILEKAYQA LGSSECATWP TGYKSLGSQA AVLDIGGSSM GFSSLQDLHF YGGSSSYMDD  180
QHQLMLQLDQ RPTTMDHNFL TLGESGGSSV SKKGAMPAAS NHCSSTSNSS MMWAGGEEQQ  240
AKSAATGQLQ MGSIMSGDSI GSKAFEGSSS KLEMMSSPPS QQAPPAGNEG MSSPMVGAQA  300
RNMLLCHLLL ADTATASTGN GEARTTTAHP DGAAAAACPA GVTAATALDL AAARDLAAAA  360
AAVATPPAWT LVALETGVGG GLDVGGARDR RRGRVPGGGG GWRRRRQGRG GGPTTLGVSM  420
VTRCDALKIW TGGRVGVAAR RRLDRPARVQ DLTIHLKFAG TTDSSRSIDD GGDSAPPRVR  480
RGMRCPRWIW EVRAAGGSAA RRIRPPSPEK NFGIRGRLVD IAAAVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	405	RRRGRVPGGGGGWRRRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969050	3e-87	EU969050.1 Zea mays clone 325800 myb family transcription factor-related protein mRNA, complete cds.
GenBank	KJ728054	3e-87	KJ728054.1 Zea mays clone pUT6200 G2-like transcription factor (GLK34) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810576.1	1e-120	myb family transcription factor APL-like
TrEMBL	A0A3L6S4C0	1e-118	A0A3L6S4C0_PANMI; Myb family transcription factor APL-like
STRING	Pavir.Db00488.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	2e-41	G2-like family protein