PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00067.1.g01880.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 681aa MW: 72799.4 Da PI: 5.5727 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 387.6 | 1.4e-118 | 282 | 651 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaa 80 v +L++cA+ +++ d+++a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++l++ pp+e ++ ++ ++a Zjn_sc00067.1.g01880.1.sm.mk 282 VGALTACADSLATCDQHAADYYLARLGEMASPAGpTPMHRVAAYFAEALAIRVVRMWPHLFDVTPPRELTDGAvDDDDAMA 362 678*****************************************************************998886788999* PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleet 161 l++++ v+Pi++f h+t N+ +l+a+eg++rvH+iDfdi+qGlQWp Llq+La+R+++p+++RiTgvg+ s++el+et Zjn_sc00067.1.g01880.1.sm.mk 363 LRILNAVTPIPRFLHFTLNERLLRAFEGHDRVHVIDFDIKQGLQWPGLLQSLAARASPPAHVRITGVGE----SRQELQET 439 *********************************************************************....9******* PP GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 g rL+++A++lg+ fef++ v++rled++l++L+vk+gE++aVn+vl +hrll+++ + ++L lv s+ + ++ + Zjn_sc00067.1.g01880.1.sm.mk 440 GARLEHVAASLGLAFEFHA-VVDRLEDVRLWMLHVKRGECVAVNCVLTVHRLLRDESGAS--LADFLGLVGSTGAAILLLG 517 *******************.7********************************6554444..589**************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 e+e +ns+++ +rf++al+yy+a fd++ +a+l+ +s +r+k E++ ++rei+n+va eg++r+erh t++ Wr+r+e++ Zjn_sc00067.1.g01880.1.sm.mk 518 EHEDALNSGRWEARFARALRYYAAAFDAVdAAGLAYASPARTKAEEM-FAREIRNAVAFEGTDRFERHDTFAGWRRRMEDC 597 *****************************9999**************.********************************* PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374 GFk++ +++++a+q +l+ r+++ yrv+ + ++l+l W ++++++vSaW+ Zjn_sc00067.1.g01880.1.sm.mk 598 GFKNAGIGDREAMQGRLISRMFAPGNYRVQAQgdGEALTLQWLNQAMYTVSAWT 651 ***********************555***9654256677**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.501 | 255 | 629 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.9E-116 | 282 | 651 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MEVSACRSLG LAVVVAAVRA LRHSMLSLIQ EEEEEEEEGD EEEGNKFLLG TSHPAVSPIS 60 GMLAGCSFSS SRHQMSTTPR FDILQCGFSK RSNRGGDGAA APRVAAADPR AGGGNCSFRA 120 HPAPVTQAVS WGAKQEPSGN VAGGFWERSR AIKRAHEEDA VEEYGGPTVR AKRTRMGGDG 180 DEVWFHQSIA GTVQQAAPGE GEESEEEKVF LVPSAATFPH GMAAAGPSLA AAKQEFSNSP 240 SPASSGGTDG GGTSAVPPPP QVHARNGVPA HGEAGRETME LVGALTACAD SLATCDQHAA 300 DYYLARLGEM ASPAGPTPMH RVAAYFAEAL AIRVVRMWPH LFDVTPPREL TDGAVDDDDA 360 MALRILNAVT PIPRFLHFTL NERLLRAFEG HDRVHVIDFD IKQGLQWPGL LQSLAARASP 420 PAHVRITGVG ESRQELQETG ARLEHVAASL GLAFEFHAVV DRLEDVRLWM LHVKRGECVA 480 VNCVLTVHRL LRDESGASLA DFLGLVGSTG AAILLLGEHE DALNSGRWEA RFARALRYYA 540 AAFDAVDAAG LAYASPARTK AEEMFAREIR NAVAFEGTDR FERHDTFAGW RRRMEDCGFK 600 NAGIGDREAM QGRLISRMFA PGNYRVQAQG DGEALTLQWL NQAMYTVSAW TPASDGDAGG 660 STVSASLSVS VSTTASHSQQ S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-59 | 288 | 654 | 26 | 382 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812393.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A1E5WNH3 | 0.0 | A0A1E5WNH3_9POAL; Scarecrow-like protein 28 | ||||
STRING | Si008220m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-126 | GRAS family protein |
Publications ? help Back to Top | |||
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