PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00067.1.g01660.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 341aa MW: 37069.2 Da PI: 8.6686 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.4 | 1.4e-24 | 92 | 136 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Zjn_sc00067.1.g01660.1.sm.mkhc 92 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 136 79****************************************986 PP | |||||||
2 | QLQ | 61.9 | 1.7e-21 | 22 | 56 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++++ Zjn_sc00067.1.g01660.1.sm.mkhc 22 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPVR 56 5********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.5E-11 | 21 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.07 | 22 | 57 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.0E-16 | 23 | 56 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.346 | 92 | 136 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 93 | 135 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MPSSASSAVM GMGGYPPRSA AVFTAAQWAE LEQQALIYKY LMAGVPVPPD LLLPVRPNSA 60 AFSFGPAAAA SSFYHHHHPS LSYYAYYGKK LDPEPWRCRR TDGKKWRCSK EAHPDSKYCE 120 RHMHRGRNRS RKPVESKSAS PAHQPQPQLS TVTTTTRETA PLQPLTVGIK AQSLSLGGTG 180 SSQLHVDASS YGSKFTLGGK ADDVGELSFL SGASGNNRGF TIDSPSDSSW HSLPSNVPPY 240 TLPKTRDSGL LSGAYNYSNI EPSQELGQVT IASLTQEQER HSFNGGAGGL MGNARHENQL 300 LRPFFDECPA ARDSWSEMDD ARSNRTSFST TQLSISIPRC D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641605.1 | 0.0 | growth-regulating factor 5 isoform X4 | ||||
Swissprot | Q6AWY4 | 0.0 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
TrEMBL | A0A0A9F0Q1 | 0.0 | A0A0A9F0Q1_ARUDO; Uncharacterized protein | ||||
STRING | OPUNC06G01050.1 | 0.0 | (Oryza punctata) | ||||
STRING | ORGLA06G0010200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11046 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-22 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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