PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g01390.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 312aa    MW: 33512.6 Da    PI: 10.0719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g01390.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191562148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEdellvd++++ G g+W++ ++  g++R++k+c++rw +yl
  Zjn_sc00067.1.g01390.1.am.mk 15 KGPWTPEEDELLVDYIQKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                                  79********************************************97 PP

2Myb_DNA-binding59.57.5e-1968113148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rgr+T eE++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Zjn_sc00067.1.g01390.1.am.mk  68 RGRFTDEEEKLIIHLHSRLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
                                   89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6661062IPR017930Myb domain
SuperFamilySSF466891.03E-3112109IPR009057Homeodomain-like
SMARTSM007172.8E-151464IPR001005SANT/Myb domain
PfamPF002492.2E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241669IPR009057Homeodomain-like
CDDcd001672.84E-121762No hitNo description
PROSITE profilePS5129427.99763117IPR017930Myb domain
SMARTSM007175.3E-1767115IPR001005SANT/Myb domain
PfamPF002493.9E-1768113IPR001005SANT/Myb domain
CDDcd001671.80E-1370113No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRSPCCDQE AGVKKGPWTP EEDELLVDYI QKNGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTDEEEKLII HLHSRLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLNM  120
GIDPVTHGPR TDLNLLAGLP NLLAAANLGG NLAAAANTTW DINALKLQAD AAKFQLLQGL  180
VRAIATAAAP SVDLMTLLAA SSGGLSQTIG VDHQGSRRLQ YDGLLNLPAL TTVPAVTSAG  240
MTSFVGLLNV AVISSHHQVS SSSRLYLSVP ATDRLMKSES AKTVDPLLLV GKVLLAQLGP  300
ACQPAAPISG AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-301511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276651e-131KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811879.11e-141transcription factor MYB93-like
SwissprotQ9S9Z26e-84MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A1E5W8511e-149A0A1E5W851_9POAL; Transcription factor MYB39
STRINGSi006790m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-80myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]