PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00067.1.g00570.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 509aa    MW: 55343.8 Da    PI: 6.6465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00067.1.g00570.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.31.5e-83254793374
                          GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlar.svselykalppsetseknsseelaa 80 
                                   ++L +cA +v++g++e+a ++Lar   l a  +g  p +Rla  f+  La+r+ r + + +++al   +++  +   + +a
  Zjn_sc00067.1.g00570.1.am.mk  25 KALRDCAAHVEAGSTERAASCLARATGLaAVLAGnVPQRRLAVPFVDCLARRMIRpTDPAIADAL-IDPSECIDRRCVRSA 104
                                   68999********************9995666775699*****************5555666665.444444456677789 PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavege...........ervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvg 148
                                   ++l++e+sP++k ++++ N+aI eave+e           + vH+iDf   + q+ QW+ Ll+ +  R+e++p+lR+T+v+
  Zjn_sc00067.1.g00570.1.am.mk 105 RRLLFELSPFPKAAFVVSNSAIIEAVENEkvvvlsrsninTNVHVIDFAgpAAQPNQWIELLHDFHRRREDAPHLRMTVVH 185
                                   9****************************77777666666667*****75589**************************** PP

                          GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll........... 214
                                   s    + e l +  e   + A++l++ f++++ va +le+l++++L    ++k+gEa a+ +  qlhrll           
  Zjn_sc00067.1.g00570.1.am.mk 186 S----DGEFLAKASELVVDEADRLNMAFQIHT-VAGQLETLDFDDLhgvlHLKSGEARAIICTQQLHRLLaapdetaptsg 261
                                   *....9**************************.7999*****999877668999*************************** PP

                          GRAS 215 .......................................................desvsleserdevLklvkslsPkvvv 240
                                                                                            +++++ +  ++L++ ++l Pkv+v
  Zjn_sc00067.1.g00570.1.am.mk 262 fvsaarhfnqmatiarlqqvaststsssaacgedtdahhtrspatplcfvsppasTPPLQMPAALASFLRAARGLAPKVMV 342
                                   *****************************************************88666677778888************** PP

                          GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrer 318
                                   v+eq+adhn++sF +rf++aleyy+a++ sl+a +++      + + vE+++l++ei++v+  ega+rrerh +l+kW +r
  Zjn_sc00067.1.g00570.1.am.mk 343 VTEQDADHNGASFRKRFADALEYYAAVYCSLAAAAAAYRrpaADLAEVEQAVLAEEIRDVLLREGARRRERHDRLQKWAAR 423
                                   *******************************6664443334488899********************************** PP

                          GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   le aGF++vpls+ a+   + +l +++++g +  e +g+l+l+W + pL+svSaWr
  Zjn_sc00067.1.g00570.1.am.mk 424 LEVAGFRNVPLSYVAMRRGNEMLGRCGVRGCESAELRGCLLLCWCSCPLYSVSAWR 479
                                   *******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.3411459IPR005202Transcription factor GRAS
PfamPF035145.3E-8125479IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MHRPENDGAA QGPWADDDNI SHLGKALRDC AAHVEAGSTE RAASCLARAT GLAAVLAGNV  60
PQRRLAVPFV DCLARRMIRP TDPAIADALI DPSECIDRRC VRSARRLLFE LSPFPKAAFV  120
VSNSAIIEAV ENEKVVVLSR SNINTNVHVI DFAGPAAQPN QWIELLHDFH RRREDAPHLR  180
MTVVHSDGEF LAKASELVVD EADRLNMAFQ IHTVAGQLET LDFDDLHGVL HLKSGEARAI  240
ICTQQLHRLL AAPDETAPTS GFVSAARHFN QMATIARLQQ VASTSTSSSA ACGEDTDAHH  300
TRSPATPLCF VSPPASTPPL QMPAALASFL RAARGLAPKV MVVTEQDADH NGASFRKRFA  360
DALEYYAAVY CSLAAAAAAY RRPAADLAEV EQAVLAEEIR DVLLREGARR RERHDRLQKW  420
AARLEVAGFR NVPLSYVAMR RGNEMLGRCG VRGCESAELR GCLLLCWCSC PLYSVSAWRP  480
DPGEAAGDTE YLSPPSQVVN PANSMNFSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-16336480241380Protein SCARECROW
5b3h_A2e-16336480240379Protein SCARECROW
5b3h_D2e-16336480240379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980153.20.0scarecrow-like protein 3
TrEMBLA0A1E5WC770.0A0A1E5WC77_9POAL; Scarecrow-like protein 3
STRINGSi028262m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.15e-60scarecrow-like 3