PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00066.1.g03280.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 138aa MW: 16571.8 Da PI: 7.9005 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.2 | 5.1e-22 | 17 | 72 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++ Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k Zjn_sc00066.1.g03280.1.sm.mk 17 KKRYHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 72 678899***********************************************998 PP | |||||||
2 | HD-ZIP_I/II | 64.2 | 3.1e-21 | 20 | 101 | 3 | 84 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +r + q+++LE +F+e + + +++++l+reLgl+prq++ WFqnrR +k+++ d +L+++ d+++ en ++++ Zjn_sc00066.1.g03280.1.sm.mk 20 YHRHTPRQIQMLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMKAQHERADNCFLRAENDKIRCENIAMREA 100 3477889********************************************************************999876 PP HD-ZIP_I/II 84 v 84 Zjn_sc00066.1.g03280.1.sm.mk 101 L 101 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.85E-22 | 6 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 11 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.042 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-20 | 15 | 78 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-19 | 17 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.22E-17 | 17 | 75 | No hit | No description |
PRINTS | PR00031 | 3.1E-5 | 45 | 54 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-5 | 54 | 70 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MDFGDDVMEG SDSQRRKKRY HRHTPRQIQM LEAMFKECPH PDENQRMQLS RELGLEPRQI 60 KFWFQNRRTQ MKAQHERADN CFLRAENDKI RCENIAMREA LRNVICPTCG GPHVADDYFD 120 EQKLRMENAR LKEEASLF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728523 | 1e-171 | KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954072.1 | 6e-90 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 8e-87 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A3L6F4D2 | 2e-91 | A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8 | ||||
STRING | Si016483m | 2e-89 | (Setaria italica) | ||||
STRING | GRMZM2G145690_P01 | 3e-89 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15929 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 3e-67 | homeodomain GLABROUS 11 |