PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g02980.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 285aa    MW: 31313.4 Da    PI: 6.7222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g02980.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37e-08168215347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                     +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
  Zjn_sc00066.1.g02980.1.am.mkhc 168 AWTLCEVMKLVDGVALYGAGKWSEIRKLAFssySYRTSVDLKDKWRNL 215
                                     7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.635161220IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-12163218IPR009057Homeodomain-like
SuperFamilySSF466891.33E-14163218IPR009057Homeodomain-like
SMARTSM007173.0E-7165218IPR001005SANT/Myb domain
CDDcd116607.83E-18167217No hitNo description
PfamPF002499.5E-6168215IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEVDASRDTL DNKCEENEFE KKGSSDPVVY QLVRVEGDGT FVPATEDDVL QFEHFLNDEK  60
VDLPSVEDLG HVEELFNDSS KLEAAAIDTK KLHAGLEDNI YSGKCEEAST TVGVMLGKDG  120
KVGNHTRKVF EAPPMVNAVK GGHAEAVENK GVRKPKKNQA FTRKHHRAWT LCEVMKLVDG  180
VALYGAGKWS EIRKLAFSSY SYRTSVDLKD KWRNLIRASK TQLHAIEDGG CPRKTNPSII  240
PIPPSILLRV KELNELQSQG SGFAGPLQFS GSNGKVVQGK GSGFL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668447e-50BT066844.1 Zea mays full-length cDNA clone ZM_BFb0074H17 mRNA, complete cds.
GenBankJQ3379427e-50JQ337942.1 Zea mays clone ZmMYB-R1 MYB-related protein mRNA, complete cds.
GenBankKJ7277387e-50KJ727738.1 Zea mays clone pUT5679 MYB-related transcription factor (MYBR67) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021314012.12e-72uncharacterized protein LOC110434400 isoform X2
TrEMBLA0A1D6HLX14e-78A0A1D6HLX1_MAIZE; TRF-like 6
STRINGPavir.J06110.1.p3e-73(Panicum virgatum)
STRINGSi016649m1e-71(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-28TRF-like 6