PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00066.1.g02950.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRF | ||||||||
Protein Properties | Length: 395aa MW: 42995.9 Da PI: 8.0905 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.4e-25 | 89 | 132 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Zjn_sc00066.1.g02950.1.sm.mkhc 89 DPEPGRCRRTDGKKWRCSQEAYPDSKYCEKHMHRGKNRSRKPVE 132 79***************************************998 PP | |||||||
2 | QLQ | 57.9 | 3e-20 | 18 | 52 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++ Zjn_sc00066.1.g02950.1.sm.mkhc 18 PFTATQWQELEHQALIYKCLASGKPIPSYLMPPLR 52 9******************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.7E-11 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.4E-14 | 18 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.606 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.658 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.6E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MMMMTNRAGG GAGTGRYPFT ATQWQELEHQ ALIYKCLASG KPIPSYLMPP LRRILDTALD 60 TSPPLAFPPQ PSLGWGCYGM GFGRKADEDP EPGRCRRTDG KKWRCSQEAY PDSKYCEKHM 120 HRGKNRSRKP VEMSLATPTP SANAASAASA TTAVSSPAPS YHRQAAAAAH NATPYNALYC 180 GSPFAASTRP AAAGAYHAAS QVSPFQLHLD TTPPHPPGSY YALDQRDYAY GHTAKQVGEH 240 AFFTDGGASE RNRHAAGQWQ FTQLGMEPKP TTPSLFPDGG YGNGAASAYA VDMTKEDNEE 300 ERRHQQQHCF VLGTDLRLER PSNPDVPEAQ KPLRPFFDEW PHEKNSKGSW MGLGGETQLS 360 MGIPMAANDL PVTSHYRNGA PTSHVSVSYT PPTNV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970292 | 1e-146 | EU970292.1 Zea mays clone 343148 atGRF5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701613.1 | 0.0 | growth-regulating factor 1 isoform X2 | ||||
Swissprot | Q6AWY8 | 1e-158 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A2T7FCW6 | 0.0 | A0A2T7FCW6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03212.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-49 | growth-regulating factor 5 |