PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g02020.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 659aa    MW: 70498 Da    PI: 10.6489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g02020.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.51.6e-085315582855
                           AP2  28 rkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++r++lg+f tae+Aa+a+++a++ + g
  Zjn_sc00066.1.g02020.1.am.mk 531 KTRIWLGTFETAEDAARAYDEAARIMCG 558
                                   59*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.63495566IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-19512567IPR001471AP2/ERF domain
SMARTSM003809.4E-15518572IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-11529567IPR016177DNA-binding domain
PfamPF008473.0E-4530557IPR001471AP2/ERF domain
CDDcd000184.25E-15531566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MVRASDLHVK EGEESQVGTI VAAERKKRRR RDNPSCVKRH TSGRCGLYSG HSDRDVDEKA  60
HHGLPINKKN ETETSLSSTA RSASKLQTPN RVMEKPWTAL LRSKGFMHLA QCFAAVVVVV  120
TLRTSLSWRA EIIPRSHGGF RVLSGVPPSL PAFAGGPFAR TCRGQGWQCV RRAPRVPART  180
PITKISNKWV MMHQATKALH NPADILRLKA TSPRDQVSFT SSKKQRDRNG FCLLRRSQLD  240
VAPTTVCAAL GMASASIRSA LGRSYPTLIQ AWAPRRIACD DEDDKCVACS AAHARSHRTH  300
AHQSLSSQDW TTPCVAPVMS AHGSSSLRVE GVALLPMAAL EVGAPVGNVT AAASPPWPRL  360
HPEARRHMCR VALGPGRLAY GTFVDRAPDV GAVDAACVPS VVKPGDSTLP AGAFPRHVTR  420
WCDRISDDSV ERARALESGA RQPSRSRARS QEAEVSSVAG RVQITGAASR SIAVGVSDNG  480
AGAATVPRRA AAPLGLLGLR DPPPPPVRRP AATSSPPRPP PPDQSEMIDR KTRIWLGTFE  540
TAEDAARAYD EAARIMCGPR ARTNFPSDAA ASAAAASSSS SFLSAALVEK LHRFNLASVQ  600
VAQRQREAAA AAAASASAAA TAPSPSAVQR GGGTFLEEQH VEQMIEELLD SNFSMEICY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430RKKRRRR
22431RKKRRRRD
32530KKRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039751e-71AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0149581e-71AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-71CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2846422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-10ERF family protein